Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1538 ATGTCGAATAATTTAAAGACATACGATGAGAATGGTGATAGGTGTGTGATGTTGTTTGGTGTGAACATCGCAAAAAATCTTGTCACAGATGATGACACCATGAACGAGAGTTTTAGTCTGGAAAACTTCAATCATAGACCTGATGAGTATGAAAACGAAAATCAAGAATTTGATACTGGTCAAAGTTCCAACCATGAACACATCAAAAAGGTGAAACCATGGACAAGGACGGAGCACAAGGCTTTCTTGAAAGGTCTAAAGGCTGTTGGAAAAGGCAAATGGAAGCGAATATCGAAGGATTTTGTGGTGACCAAGACTCCTACTCAGGAAGAAAATGAAAATTCAAAAGCTACTGGTGCTTCTTCTGTATAG 372 0.3871 MSNNLKTYDENGDRCVMLFGVNIAKNLVTDDDTMNESFSLENFNHRPDEYENENQEFDTGQSSNHEHIKKVKPWTRTEHKAFLKGLKAVGKGKWKRISKDFVVTKTPTQEENENSKATGASSV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1538 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 109 IPR017930 -
Mtr1g1538 123 MobiDBLite consensus disorder prediction 49 72 - -
Mtr1g1538 123 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 4 109 - -
Mtr1g1538 123 PANTHER TRANSCRIPTION FACTOR KUA1 4 109 - -
Mtr1g1538 123 CDD SANT 73 109 IPR001005 -
Mtr1g1538 123 Pfam Myb-like DNA-binding domain 72 109 IPR001005 -
Mtr1g1538 123 Gene3D - 72 111 - -
Mtr1g1538 123 SUPERFAMILY Homeodomain-like 73 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1538 Mtr-Chr1 19294533 19298113 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr1g1538 Myb_DNA-binding 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1538 - - mtr:MTR_1g048660 96.2857