Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1536 ATGGAACAAAACATAGAATTCACTTTTTGGTCCTCAAACAACCTAGAAATTCAAAATTCAATTTCTCAAAGCAATAACATGAAACAAACACAAACCCATTTTCAAATCCCTCAAACCACTTTCTCCAAACCTCCAAGGTCATCCTCAAACCTAAGCAACCGCAAACCCTCCTTGAACATCACAATCCCTTCTATAACAAAACCTCTCCCACAACAAAACATAGTAAAAAGTGAAAACACCAACACCAAAGAGGATAATAAGCACTATAGAGGTGTTAGAAGAAGAACATGGGGAAAATTTGCTGCAGAAATCCGTGACCCTAATAGAAAAGGATCAAGAGTATGGCTTGGAACCTTTGATACAGCCATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTCCAGATGAGAGGAAGTAAAGCCATATTGAACTTCCCTCTAGATGTTGCTACTGATTCTGTAGAATCATCACTTTCTAACTGCATCAAAGTTGGTAAGAAAAGACAAAGAGATGAAGGGAACTGTGTTGAGATTAATAATAATAATAATAATATTAAGCAAGTTAAGAAAGAAGAAGGGGTTTTAGCTGCTCCTTTGACTCCTTCATGTTGGAAAGGGTTTTGGGATACTGATGTTATGGGAACTATCTTCAGTGTTCCTCCTTTGTCACCCTTATCTCCACTCATGGGATTTTAA 696 0.3736 MEQNIEFTFWSSNNLEIQNSISQSNNMKQTQTHFQIPQTTFSKPPRSSSNLSNRKPSLNITIPSITKPLPQQNIVKSENTNTKEDNKHYRGVRRRTWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFQMRGSKAILNFPLDVATDSVESSLSNCIKVGKKRQRDEGNCVEINNNNNNIKQVKKEEGVLAAPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMGF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1536 231 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 MobiDBLite consensus disorder prediction 37 61 - -
Mtr1g1536 231 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Mtr1g1536 231 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Mtr1g1536 231 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Mtr1g1536 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 220 - -
Mtr1g1536 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 16 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1536 Mtr-Chr1 19260869 19262191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1536 37 227 AP2-EREBP Transcription Factor Family AT5G61600 47.761 1.91e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g1536 AP2 5.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1536 K09286 - gmx:100795866 239.965