Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1533 ATGACAACAACAAAAGAAACTTCAAACTTAGATCTCATACGCCATCATCTCTTAGGTGACAACATCTCTGACCCGTTTCTACATCCTGTTAAACTTGAAAACCCTTTACCAGAATTTGATTTCTCTTCATATATTTCAGAAAACAGCACTTTCTTCACTTTCCTTGAAAACTATGATTTAATAGCTGACATGGAATTCTTCACTCACACTTCATCTTCAAAGGAAACAACCCCTTCAAAGGAAATCAAAGATGAAGTAGCAATAGCAACTACTATGGTGTCATCAAAGAAGGTTAAGAAAGAAGAAGAATGTGTTGATGAGACAAGAAGATATAGAGGTGTAAGGAGAAGGCCATGGGGGAAATTTGCAGCTGAGATAAGGGATCCATCAAGGAAAGGAAGTAGGGTTTGGTTAGGTACATTTGACTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTGTTTGTGATCCTAAGCCAAATAGTTGTGGTAGGAAAAGGAGAAGAGAAAGTGAAATTGAAGGTACAAGATGTTCAAGTTCAAGTTCATAG 606 0.3746 MTTTKETSNLDLIRHHLLGDNISDPFLHPVKLENPLPEFDFSSYISENSTFFTFLENYDLIADMEFFTHTSSSKETTPSKEIKDEVAIATTMVSSKKVKKEEECVDETRRYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGVCDPKPNSCGRKRRRESEIEGTRCSSSSS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1533 201 MobiDBLite consensus disorder prediction 179 193 - -
Mtr1g1533 201 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Mtr1g1533 201 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Mtr1g1533 201 MobiDBLite consensus disorder prediction 177 201 - -
Mtr1g1533 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 190 - -
Mtr1g1533 201 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Mtr1g1533 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 190 - -
Mtr1g1533 201 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Mtr1g1533 201 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Mtr1g1533 201 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Mtr1g1533 201 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Mtr1g1533 201 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1533 Mtr-Chr1 19212526 19213499 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1533 1 187 AP2-EREBP Transcription Factor Family AT5G07580 41.262 1.11e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g1533 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1533 - - ccaj:109813158 254.603