LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1499	ATGGATGATTTCGATGTCATGGACATGGACATGGACATGGACATGGAAATGGACGTTCCTCTCCCCGAAGAACTCGAATTACTCGAATCAACCTATCGCACTTACGAACAACAACCCGATGATGATGACCACTACTTTTACAATCCTCCCGAAGACGAACCCGAACCCGAACCAGAACAACAATCATCGCCAACAGATCTCGTTAACAGCCACAAGCGTTCTCGTTCGAATTCAGATTCGGATTTGGATTTGGATTCTTCTGATGTTGAAAAGAGTGAGAAAGTTAGGGTTAGGGTTGCGGAAGATGCTCCTGCAGAAGAAGAGGATTGGCTTCGGCCACCTCCGACTTCGGATACAGTCGAAGAAGTGAGATTCTCCAAGGATAAGACGTTATCGCGATTTGCGTCGGAGATTGATGGTGAAGTTATGACGGTTACTGCGCCGAATGGTGATAGGGTTTATACGAAGCTGGATAGGTATTACGGTGAAGATCGAGTTAGGAAGCTGAATTGTAGAGGAGATTCTTCTGATCTTGCTGTAGAACCTATTAGTGTTTTGTTAGAAAGGTTAGATCAAGAGAATTTCGCTAAGACCTTGGAAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACACTAACGGTCCATGAAAAACTTTGGGTCGATAAATATGCTCCCAAGTCTTTTACTGATCTTCTTAGCGATGAACAGACAAATCGCGAGGTACTCTTGTGGTTAAAACAATGGGATTCTACCGTGTTTGGATCTGAAATTCGAAGTACATCAGACGACGTTTTGTCTGCTTTGAAACGGCATTCTTCTATATCCCATAAACCGAAACCTCTAGCTTCGAATTTTCCAAGAACAAAAGGAGGGCACAATTGGAGTAGTAATAGTTCTTCAAATTTTTCAAGAACAAGAGGAGGGCACACCTGGAGTAGTAATAGTAGCAGGTATACAAATTTTAAGAGTACAGATGAGAGTGGTAGTTCAAATAGTTTTCAGGATACACGCAATGCGAAGTCACGGAATACCGGTGCACCAGAACAGAAGATCCTTCTGCTATGTGGACCACCAGGTCTGGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTTGAGGTTAATGCCAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTCGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAAGAAGCCTGATGCAGGGAAGCAAAGTTTGGATAAAGGACAAATGGAAAGGAAATCATCAAAGAAGGGGCGAAAAACGGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCTGCCTTAAGATCATTACGCCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTAAGCAGACTAAAATATATATGTAACAAGGAGGGGGTGAAAGCCAATGCCATTGCACTCAGTGCTTTAGTGGATTATACAGCATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCTAAGAAGAAAGAAGCCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAAAATGTTCTCGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACGAAAAAGATGGAAAGAAAATCTCTTAATAGCAAGTTCTCTGAATTTGACACCTTGTACTCCCTTATATCATACCGTGGTGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGTCTCAACAGTCTTGAAGTTTATGATCTGTTGCATCAATATATAATGCGTACACAACAAATGGCTCTCCTTGTTCATTTGCCTCCCATAGCAATTATTGTACATCATACAGTAGCCCAAGTTCAGAAGCCAAACATTGAGTGGCCAAAGTCATATCACAGATATCGAACAACAATGATGGAAAAGATGGACATTTTGAATACTTGGCACCACAAAATATCGCCACATATTGCAAGGCACTTATCACCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTGGACATTTTATCCCCACCATCCATAAGACCGGTGGCATTACAACTACTGTCGGATAAGGAGAAGAATGATATTGCTCAATTAGTTAGCACAATGGTCTCATATGCTATCACATATAAGAAAATGAAATCAGATGCACTGCCTAATACCCTGAAGTATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGTAGCTTTATAAACTTTAAGGATTATACATCAAACCATTACGCGCTTTCTTTACCTATGAAGCAGGTTTTGGTGCATGAAGTTGAAAAGCAAAAGATTTTACAAGCTAATATTAAAACTGCGACTTTAACAAATGGAGGGCATGACGCAATTGAGGCTGGAAACAAAAACAACATCCCATTTGCTAATACCAAGAATCATGCAGCTGCACTTGATATGAAAACCATTGAAAGTCAACCTAATGTTTTAGCAAGGAAATCAAATGAACATCCGAAGACAGTTTCACCAAACTTGAATCCCACTAAAATTCCAAATGCAACAAACAAGACAAAACTGCTAGACATGGCAAATAAGAAAAAACCATCTAGGAGTTCCTTAAATTTCTTCGACAGGTTTAAGAAGTCAAGTGTTAAGGGTCTCCAAAATGATGACAGATCTCTACAGAAAGAAACTACATCAGAGAAAGATCGAAGCCCTTTACTTTTTAAATTTAATGAGGGTTTTACAAATGCAGTCAAACGGCCTGTTCGAATGCGCGAATTTTTGTCCTAG	2958	0.4037	MDDFDVMDMDMDMDMEMDVPLPEELELLESTYRTYEQQPDDDDHYFYNPPEDEPEPEPEQQSSPTDLVNSHKRSRSNSDSDLDLDSSDVEKSEKVRVRVAEDAPAEEEDWLRPPPTSDTVEEVRFSKDKTLSRFASEIDGEVMTVTAPNGDRVYTKLDRYYGEDRVRKLNCRGDSSDLAVEPISVLLERLDQENFAKTLEASSESQSVVDVPETLTVHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSISHKPKPLASNFPRTKGGHNWSSNSSSNFSRTRGGHTWSSNSSRYTNFKSTDESGSSNSFQDTRNAKSRNTGAPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAEKKPDAGKQSLDKGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKANAIALSALVDYTACDIRSCLNTLQFLSKKKEALNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSLNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMALLVHLPPIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEKMDILNTWHHKISPHIARHLSPTSFVEDLISPLLDILSPPSIRPVALQLLSDKEKNDIAQLVSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGSFINFKDYTSNHYALSLPMKQVLVHEVEKQKILQANIKTATLTNGGHDAIEAGNKNNIPFANTKNHAAALDMKTIESQPNVLARKSNEHPKTVSPNLNPTKIPNATNKTKLLDMANKKKPSRSSLNFFDRFKKSSVKGLQNDDRSLQKETTSEKDRSPLLFKFNEGFTNAVKRPVRMREFLS*	986

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	889	930	-	-
	Mtr1g1499	985	Gene3D	-	502	572	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	446	467	-	-
	Mtr1g1499	985	SMART	AAA_5	351	505	IPR003593	-
	Mtr1g1499	985	CDD	HLD_clamp_RFC	502	560	-	-
	Mtr1g1499	985	Pfam	ATPase family associated with various cellular activities (AAA)	355	481	IPR003959	GO:0005524\|GO:0016887
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	275	348	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	35	51	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	1	23	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	446	465	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	889	914	-	-
	Mtr1g1499	985	CDD	AAA	350	440	-	-
	Mtr1g1499	985	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	15	984	-	-
	Mtr1g1499	985	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	220	550	IPR027417	-
	Mtr1g1499	985	Gene3D	-	219	500	IPR027417	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	1	122	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	72	122	-	-
	Mtr1g1499	985	MobiDBLite	consensus disorder prediction	291	348	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1499	349	549	Core DNA Replication Machinery Family	AT5G22010	31.481	3.49e-14	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1499	K11269		-	gmx:100791474	1300.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g1499	1	18547502	18565689	Mtr1g1499	1	18547502	18565689	ECH