Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1498 ATGGGTGAGGTGGCAGCGTTGCACTCTGAAAGCAATGACACAAAACATACGACCAAAGAAGACGTTAATCCTCCAAAATCAAATCTGGAATCCTTGCCTGGAGAAGAATCAAGTGAATCTATAAACACAAATGATCTGCAAGATAAAGGATATATGGAATATGGATGCCAACACTACCGGAGAAGGTGCCGAATCAGGGCTCCTTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGATGCGAAAAATGGTATCAATGTAGATTATAAACATAGACACGAAATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGCAACTGAACAAGAGGTTCAGCCAAATTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGTAGAACTGGTGGCCAGGAGTCTTTCTTCCATTGTAATAAGTGTGGTTGTTGCCTCTCAACTCAGGTGGAAAACAATCACCCCTGTGTGGAAGGAGCAATGCATCGTGATTGCCCCGTGTGTTACGAGTATATATTTGAATCAACAAAAGAAATTGTTGTTATGCCGTGCGGACATACAATCCATAAAAGTTGTATAGATGAAATGAGAGAACATCACCGGTATACATGCCCTCTATGTTCGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACTCCAATGCCTGAGCAATACCAAAATAAAATGGTTTGGATCCTATGCAATGACTGCGGAAACACTGGTAATGTTCGGTTCCATTTTGTGGCTCTCAAATGCCTCAACTGCAACTCCTATAACACACGACAGACGAGAGGCTGA 906 0.4227 MGEVAALHSESNDTKHTTKEDVNPPKSNLESLPGEESSESINTNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNDAKNGINVDYKHRHEMPRHQVKQVICSLCATEQEVQPNCINCGVCMGKYFCETCKLFDDDISKQQYHCNGCGICRTGGQESFFHCNKCGCCLSTQVENNHPCVEGAMHRDCPVCYEYIFESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIAATPMPEQYQNKMVWILCNDCGNTGNVRFHFVALKCLNCNSYNTRQTRG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1498 301 Pfam CHY zinc finger 56 137 IPR008913 GO:0008270
Mtr1g1498 301 MobiDBLite consensus disorder prediction 9 23 - -
Mtr1g1498 301 Pfam Zinc-ribbon 239 297 IPR039512 -
Mtr1g1498 301 ProSiteProfiles Zinc finger CHY-type profile. 49 125 IPR008913 GO:0008270
Mtr1g1498 301 SMART ring_2 192 234 IPR001841 -
Mtr1g1498 301 ProSiteProfiles Zinc finger RING-type profile. 192 235 IPR001841 -
Mtr1g1498 301 SUPERFAMILY Zinc hairpin stack 128 185 IPR037275 -
Mtr1g1498 301 ProSiteProfiles Zinc finger CTCHY-type profile. 127 191 IPR017921 -
Mtr1g1498 301 Gene3D - 263 301 - -
Mtr1g1498 301 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 8 301 - -
Mtr1g1498 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 237 IPR013083 -
Mtr1g1498 301 SUPERFAMILY RING/U-box 191 238 - -
Mtr1g1498 301 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 301 - -
Mtr1g1498 301 MobiDBLite consensus disorder prediction 30 44 - -
Mtr1g1498 301 MobiDBLite consensus disorder prediction 1 44 - -
Mtr1g1498 301 Pfam Ring finger domain 191 234 IPR001841 -
Mtr1g1498 301 SUPERFAMILY CHY zinc finger-like 53 127 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1498 Mtr-Chr1 18530935 18536421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1498 54 301 C2H2 Transcription Factor Family AT3G18290 40.711 6.15e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1498 K10144 - gmx:100803569 531.561