Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1487 ATGGAGTTTTCTTCTTCAAAATGGGTTTTCAATGTTTGTTTCTTTTTGTTGCTTTTTGTGTTCATTGTTCATGATGAAGCTATGGCTTCATCACAGATCTCTCAGTTTAGCAATGTTGAAACTGAGACACATAGGTTACCAAGCTTCAACGATTCATCAATGGCGGCAAGGGAAAAACAAGCTGAGAAATTGAATGAGCGTGCTGCTGTGGCTAATCCAAAAGAGGTGGCTTCTATGGTTGAGATGCACATCCAGAACAGTACTGAAAGAAGGAATCTTGGATTTTTCTCGTGTGGAACCGGTAACCCTATTGACGATTGCTGGCGTTGTGACCGCAATTGGCAACAAAACAGGAAGCGTCTAGCAGACTGTGGTATTGGTTTCGGTAGAAACGCCATTGGTGGTCGCGATGGAAAGTACTATGTTGTCACTGACCCAAGAGATGATGACCCTGTTAACCCTAGGCCAGGAACTTTGCGCCACGCCGTTATCCAAGATAGACCACTTTGGATTGTGTTCAAGAGAGACATGGTTATTCAGTTTAAACAAGAGCTTATTGTGAACAGTTTCAAGACAATTGATGGAAGAGGAGCTAATGTGCATATTGCTAATGGAGGGTGCATTACTATTCAGTATGTTACTAATGTTATCATTCATGGTCTTCATATTCATGATTGTAAACCTACTGGTAATGCTATGGTGAGAAGCTCAGAAACACATTTTGGTTGGAGGACTATGGCTGATGGTGATGCTGTTTCTATATTTGGTTCAAGTCATATTTGGGTTGATCATAATTCTCTTTCTCATTGTGCTGATGGTCTTGTTGATGCTGTCATGGGCTCAACAGCTATAACAATCTCTAACAACCACTTCACCCACCACAATGAGGTGATTCTGTTGGGACACAGTGACTCCTACACAAGAGACAAGCAGATGCAAGTGACCATAGCTTATAACCATTTTGGAGAGGGTCTTATTCAGAGAATGCCACGGTGTAGACATGGTTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCTATTGGTGGAAGTGCTGACCCCACAATCAACAGCCAGGGTAACAGATACAATGCTCCTGTTAACCCTTTTGCCAAAGAGGTAACTAAGAGAGTGGAAACAGCTGAAACTCAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTATATCTAAATGGTGCATATTTCACAGCATCTGGTGCTGGAGCTTCAGCTAGCTATGCAAGAGCCTCTAGCTTAGGAGCAAAATCTTCTGCAATGGTTGGTACAATGACTTCAAATGCTGGTGCACTAGGCTGCAAAAGAGGACGTCAGTGCTAA 1353 0.425 MEFSSSKWVFNVCFFLLLFVFIVHDEAMASSQISQFSNVETETHRLPSFNDSSMAAREKQAEKLNERAAVANPKEVASMVEMHIQNSTERRNLGFFSCGTGNPIDDCWRCDRNWQQNRKRLADCGIGFGRNAIGGRDGKYYVVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQFKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYNAPVNPFAKEVTKRVETAETQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTMTSNAGALGCKRGRQC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1487 450 Pfam Pectate lyase 182 365 IPR002022 -
Mtr1g1487 450 PANTHER PECTATE LYASE 17 447 - -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Mtr1g1487 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Mtr1g1487 450 PANTHER PECTATE LYASE 18-RELATED 17 447 IPR045032 GO:0030570
Mtr1g1487 450 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
Mtr1g1487 450 Gene3D - 101 443 IPR012334 -
Mtr1g1487 450 SMART amb_all 176 373 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1487 Mtr-Chr1 18389497 18394648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1487 31 450 Polysaccharide Lyase AT4G13710 78.118 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1487 K01728 - gmx:100808253 790.801