Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1482 ATGGCGGAAGATATGGAAATTGATCATATTATCGACGTTCCCGATACCCCAGAGAGATCAAATGCAGGAAACAATGATCGAAAATATGTTGGTAATCCGGAGAAGAGGGGTAGGGCCTTTCATGTTCCTAATGAAATAAGTAAATGCAACAAGTATGTAATAATATCCCCGGATAAACCTTCCCCCTCTCAAAATGCCTCCATATTTAGGAGAGCTCAAACTGAGAAAGTTTCTGGTGGACTTGGAACATCACGCTCTAGTAAAGCTGAAATGACGGAGAAAGGGAAAACTGTAAGCTCGAGGATTCCTTCTAAGTCGTCTCACCATGGACATATTTCTGTTTTCGATTTGACTGGAGAGAATGGGCAATTCCAACAACCAAAACCAGCTTTCTCACACCGTGGATCAAGAGATAACACAAATGAAGACAAGAAAGAATTGAAAGCAAGTATTGGGAATACTTCACTACCCTTAATTACTAATTCATCTAATACATCTAGAAATGCTGTCACTGGAAAGTGTAAACTAGATAACACAACACTTCCAGGTTCTAATACTTTTATGGACCGTGGCAAGAGTGTTTCTCTGTCTAATGATTCTCAATCTCAGCCGAAAGCTGAAAAGCAAGTTTCTTTGTCTCCTCGTCTTTCCACTGCTCCAAGAGGTAGAGGGAACAGGAGATTGGTACGAAATGGGTGCATTTCACCACAAAATATTGCAACAAGGGCAAAACAATCAGCTGAACAGAGCATCTTTCAAACCAATAATGTTGAACAGATCTGTGCTGGGCATTCAGTTTCTAGAAATACAATGTCTCCAATTAGTGTTGATGATATTGTTTCTGAAGAGAGACCTGGTGGTAGATTGAAAGGAAAGGGAGTACTTATTCATCCTTCATCAAATGGAACTATTCAGACTGATAGCAGCAGCCCTGTGGTCAATCTTGAAGAGGCCAGTGGTAGCAGTAATATACCAAGAAATGGATATGAAAACTGGGAGAGACAAGGTGGTTGGAGAACTACACATAATGATCAACACTTGTATGATGCGAATGGGCATCATTCGAGGAGAAGTTACGTTGAAAGACTTACTCACAGACAAAATATGAACAGACTGGACAGAAGTGATACTGGGAGCAGTCAAAATGGCAAGGATGTTCCAGCTTCACTGATTATTCCACAGGTAGGTCAGTCAACTGGACCCAGTACTACTGCTGACTCAGCGACTAAAAGGCCAAGGAAACGTGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAATTCTAAAACTGTATTCGTCAATTCATCCGGGGAATCATCAAGTTCATCCAGAAGTTGTGGCATGGATCCTGAATTAGCTGCGTTGTTATCCATACCAAGTTTCAAAAACGAACTTAATGAAGGTTTAGATGACAATGACAACAATATTTCGGTAGCTCGGGCAATGCAATTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTATATAATGATGATTATTTTGAAGGCAGTTGGGTTGACGAACATTTAGCACGGGTGCCGCAGGATGCAGGGGGTCTTTTGCACACATCTACTGATAATCATCAGATACCTCATCATACACGTATTCCGGGGGAAAATAGACAGCCCCGTTCACGACCTAATCAAAATCCTTCAAATAGGAGGAGAACTGTGCCTCAAATTCCTCTTTCTAATAGAACGACACTGAGTCGCATGACAACTCGATCGTCAAGACCTACCATATCATCTAGAGGAAGAGGAAGAGGAAGAGGAAGAGCAAGACTCCCTCGGTTTCCTCTAGAGATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAGAATGCGGTAGGGGATTTTAATGACCTGGGAATGCCCGATGACATCCGTAATGCTCATCGTGATTTCAATGAAGATGATTATGAAATGTTATTGGCTCTTGATGATCATAATCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGGTTACCACAGTCCACTGTCCAGACTGACAACTACACAGAGGATTGTGCCGTATGTCTCGAGACCCCTGTCAAGGGAGACACCATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGATTGTATTGATCCTTGGCTTGGTAGGAAAAGTTCATGCCCCGTGTGCAAGTCATCTATCACCTGA 2190 0.4187 MAEDMEIDHIIDVPDTPERSNAGNNDRKYVGNPEKRGRAFHVPNEISKCNKYVIISPDKPSPSQNASIFRRAQTEKVSGGLGTSRSSKAEMTEKGKTVSSRIPSKSSHHGHISVFDLTGENGQFQQPKPAFSHRGSRDNTNEDKKELKASIGNTSLPLITNSSNTSRNAVTGKCKLDNTTLPGSNTFMDRGKSVSLSNDSQSQPKAEKQVSLSPRLSTAPRGRGNRRLVRNGCISPQNIATRAKQSAEQSIFQTNNVEQICAGHSVSRNTMSPISVDDIVSEERPGGRLKGKGVLIHPSSNGTIQTDSSSPVVNLEEASGSSNIPRNGYENWERQGGWRTTHNDQHLYDANGHHSRRSYVERLTHRQNMNRLDRSDTGSSQNGKDVPASLIIPQVGQSTGPSTTADSATKRPRKRESSSRNPNVASHNSKTVFVNSSGESSSSSRSCGMDPELAALLSIPSFKNELNEGLDDNDNNISVARAMQLEADERLARELQEQLYNDDYFEGSWVDEHLARVPQDAGGLLHTSTDNHQIPHHTRIPGENRQPRSRPNQNPSNRRRTVPQIPLSNRTTLSRMTTRSSRPTISSRGRGRGRGRARLPRFPLEMDLDMRLDILEALENAVGDFNDLGMPDDIRNAHRDFNEDDYEMLLALDDHNHQHTGASTNLINRLPQSTVQTDNYTEDCAVCLETPVKGDTIRHLPCLHKFHKDCIDPWLGRKSSCPVCKSSIT* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1482 729 SUPERFAMILY RING/U-box 683 728 - -
Mtr1g1482 729 SMART ring_2 684 724 IPR001841 -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 522 597 - -
Mtr1g1482 729 ProSiteProfiles Zinc finger RING-type profile. 684 725 IPR001841 -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 1 15 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 284 329 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 1 43 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 298 329 - -
Mtr1g1482 729 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 543 727 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 373 407 - -
Mtr1g1482 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 729 IPR013083 -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 135 149 - -
Mtr1g1482 729 Pfam Ring finger domain 683 725 IPR001841 -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 118 134 - -
Mtr1g1482 729 CDD RING-H2_PA-TM-RING 683 725 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 55 229 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 153 218 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 363 448 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 57 88 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 545 587 - -
Mtr1g1482 729 MobiDBLite consensus disorder prediction 421 448 - -
Mtr1g1482 729 PANTHER - 543 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1482 Mtr-Chr1 18273373 18282024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1482 3 729 C3H Transcription Factor Family AT1G04790 32.212 1.47e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1482 - - cam:101513161 845.114