Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1480 ATGTCAACCTATAGTGAAGCAACTCAGCGTCTCGATAATGATAGTGTAGAGGTAGAATTCAGTAGTGATAATGGTTTTGGTAATGATGGAGATAGAAAGACGGAGAATTGCAATGGTCAGAAAAGTTTAAGTGAAATTACAAATGATGATATAAAAGCTATGGAGTTTAGCACAGAGGAAGAAGCTATACAATTTTACAAAGCCTATGCCCGTTTCCATGGGTTTGTTGTAAGGAAGGATGATGTGGTAAAGGATCACGAGGGAAAAATTGTTGCGCGGCGATTACTTTGCAATAAAGAGGGAAATAGTGAAACTAAAAATAAGAAGAATGAAGATAGTAATAGGCAAACCATGCGAACTGGATGTCATGCTAGACTTCGAGTAGCCTATGATTTCATTGAGAAGATTTGGAAAGTTACTAATTTTGAGCCCAATCACAACCATGAACCAAGTCCTCCAAATCTTGTTCATTTGATTCCGAATTATAGGAAATTGAGTGAATCAGATAAACAGATTGTCAGTGGTTTGCATTCTCAAGGTGTAAGAATCTGTCATATACTAGGTTTCCTAATGGGCCAAAAAGGAGGGCATGAAAATCTTGGATTTATCAAAAAGGATCTATACAACTACACTGATCATCAAGGAAGGGTTAGAATTGAAGGTGGGGATACTTTTGCTACTTTGAGTTATTTTCAGGGTAAAGCTGATAATGATTCGACCTTTTTTTCAGAGTTTACCTTTACAGATGATGGCCGGTTAGAAAATATATTTTGGGCAGATTCTGCAAGCAGGCTTGATTATGAATGTTTTGGCGATGTGGTTCTCTTTGACGCCACTTATAAAAAGAACAGGTATAACAAGCCGCTTGTAATTTTTACAGGATACAACCACCATGGTGAAACGACCATTTTTGCATGTGCTTTAATTTCTGATGAAAAAATAGAGACATATAAGTGGGTGTTAAATATGTTTTCAAAGGCCATGTACGAAAAACATCCAAAAGCGATTGTTACTGATGGAGATAAATCAATGAGGAAAGCTATTAGAGTTGTATTTCCAAATTCAAGGCATCGCCTTTGTTCATGGCATCTACATCAAAATGCTCGTGTGCATGTAAAAGATCCCAAATTCTTAGAAGAGTTCAACAAACTCATATATTCTAATTACACACCTGAACAATTTGAGTCTGAGTGGAAGAGGGTTGTTGACAGTTATGGTGTACCAAAGAATAAGTGGGTGATTAAAACATATAAATTGAAGCGAATGTGGGCAAGTTCATACATGCGAGACCATTTTGTGTGTGGAGTCAGAACAACCTCGATATGTGAAGGTGTGAATTCATTTATCAGGAAGTATGTTCAAAACAAAAATAGCCTTGTTGATTTTCTGCATAATTTTGAAAGAGCTGTCAAAGACTACAGAAATAATGAATTATTAGCTGATTTCAAATCATTATATTATAAACCTGTGTTGACAACTTCCTTGCCTGGATTTGAGCGTGAAGCTTCAGAAATATTCACTTTTAAAAAGTTCCTAGAAGTCAAAAAGGCGATAAAGGATGTTGCTGCAGAATCTGTCACTCACCATGCTGAGGTTGGAAATAGTGTAATTTTTAGGGTTAACGTTTACCGCAAAGATGCAGTTTTTTGGGTTCATTTTGACACGGAGCATAATAAATTTATATGTGATTGTAGACGATTTGAACGCGAAAGACTTCCATGTTCCCACATTATTTCTGTCATGAAGTATGAGAACATGGATGCTTTCCCAGAAAGTCTAATTTGCAAAAGATGGTCAAAAACAGCAAAGAAGAATCACATCTCATCATTTGCCTCCAAAGAAGGTCATAATGAGGAAAAAATGATCATGTTCCGCCGATGGGCACTTACCGCTGCATTCAATAGGCTTTGTGAGGCGTCTTGTAACAATGGCATTGATTATGAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATAAATGTACGTCGTGAGGGAAATGTCAATAAATCTGTTGTTGGAGATCCAGATAATGCTAAACCCAAAGGAGCCCCTAAAATGAAAAAATCATACATAAATAGGAGACACGTGAAAGAAAGACGTTGTTCTCGTTGTAAAAGGCATGGTCACACAATCCGAAGGTGTCCAATACTTGCTGGAATTGATGTCACATTTGATAAAGAAGAAGATGAGAATGAGAAAGAGGACGAGAAGGAATACGAGGAGGACGAAGATGCAGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAAGATGATACACATGTTGAATCTGAATATGAATCAAATCGTTTAAATGTGTCTATAAGCCACGACATGAATGATGAAACCCATTCTATGTCAGTACCAAATGGTAGACATGATGTTGATAATATCTTTGGTATTAAACGTAAGAGAGATGGTGACAAAGCCGATTTTTCAACACAAGACTCTGCGGCGAATACCAGAACAACAAATATAGACATTAAAAAGACTGATGCTTCTGTGACTCCAAATATTACAGTTAACATTGAAAACAATGGTATTCCACATGGATTCGCAAGATGGAACCATGGTGTCGGGTATGTTGGTAACTCTTTTCATGTGTACGGTGGGATTCCAAATGTGGGTGGATTAACTTCTTCACAATTCCCTCCGGCAAACATCCTTCCATCACATTATAACAACATTCCTTTGTATCCTGGAACAAATAGTTTTATGAGCGTGTTGAAGGACATGGAGAGTTTAGCAAAACATCAAAATAGATATCAAAATTAA 2787 0.3739 MSTYSEATQRLDNDSVEVEFSSDNGFGNDGDRKTENCNGQKSLSEITNDDIKAMEFSTEEEAIQFYKAYARFHGFVVRKDDVVKDHEGKIVARRLLCNKEGNSETKNKKNEDSNRQTMRTGCHARLRVAYDFIEKIWKVTNFEPNHNHEPSPPNLVHLIPNYRKLSESDKQIVSGLHSQGVRICHILGFLMGQKGGHENLGFIKKDLYNYTDHQGRVRIEGGDTFATLSYFQGKADNDSTFFSEFTFTDDGRLENIFWADSASRLDYECFGDVVLFDATYKKNRYNKPLVIFTGYNHHGETTIFACALISDEKIETYKWVLNMFSKAMYEKHPKAIVTDGDKSMRKAIRVVFPNSRHRLCSWHLHQNARVHVKDPKFLEEFNKLIYSNYTPEQFESEWKRVVDSYGVPKNKWVIKTYKLKRMWASSYMRDHFVCGVRTTSICEGVNSFIRKYVQNKNSLVDFLHNFERAVKDYRNNELLADFKSLYYKPVLTTSLPGFEREASEIFTFKKFLEVKKAIKDVAAESVTHHAEVGNSVIFRVNVYRKDAVFWVHFDTEHNKFICDCRRFERERLPCSHIISVMKYENMDAFPESLICKRWSKTAKKNHISSFASKEGHNEEKMIMFRRWALTAAFNRLCEASCNNGIDYEEALEGINSLCDKINVRREGNVNKSVVGDPDNAKPKGAPKMKKSYINRRHVKERRCSRCKRHGHTIRRCPILAGIDVTFDKEEDENEKEDEKEYEEDEDAEEEEEEEEVVEEEEDDTHVESEYESNRLNVSISHDMNDETHSMSVPNGRHDVDNIFGIKRKRDGDKADFSTQDSAANTRTTNIDIKKTDASVTPNITVNIENNGIPHGFARWNHGVGYVGNSFHVYGGIPNVGGLTSSQFPPANILPSHYNNIPLYPGTNSFMSVLKDMESLAKHQNRYQN* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1480 928 PANTHER OS02G0262500 PROTEIN 50 718 - -
Mtr1g1480 928 MobiDBLite consensus disorder prediction 1 41 - -
Mtr1g1480 928 Coils Coil 731 762 - -
Mtr1g1480 928 SMART 26again6 560 587 IPR006564 GO:0008270
Mtr1g1480 928 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 718 IPR031052 GO:0006355
Mtr1g1480 928 Pfam MULE transposase domain 273 367 IPR018289 -
Mtr1g1480 928 MobiDBLite consensus disorder prediction 670 692 - -
Mtr1g1480 928 Pfam FAR1 DNA-binding domain 64 149 IPR004330 -
Mtr1g1480 928 MobiDBLite consensus disorder prediction 725 771 - -
Mtr1g1480 928 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Mtr1g1480 928 MobiDBLite consensus disorder prediction 727 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1480 Mtr-Chr1 18232594 18235720 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1480 MULE 2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1480 - - ccaj:109792835 641.728