Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1468 ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGACGATGATGATGACAAACCTAAGAAAGCCTTTCCTTCACTCAAACCAGAATGCAGTGATCCACCTTCGCTCAATCCATTGGCCCTGGATGATCCCATCAATTCACTTTCTGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGACTTGTCCTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAATGCTCGAGAACAGCACAAGCAGCAGCAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTGCAATTCCCATGGAAACAACCGAGTACCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACCATCGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGCCCAAAGACGCTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACGTGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAACGGGTTGA 735 0.4762 MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLKPECSDPPSLNPLALDDPINSLSEEVAEEELEWLSNKDAFPAVETFVDLSCIQPDLLKHQMTSPMLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSTKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDVHSNSHRKVVEMRKQKGMGTG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1468 244 MobiDBLite consensus disorder prediction 97 116 - -
Mtr1g1468 244 PANTHER GATA TRANSCRIPTION FACTOR 1 7 239 - -
Mtr1g1468 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
Mtr1g1468 244 MobiDBLite consensus disorder prediction 1 55 - -
Mtr1g1468 244 MobiDBLite consensus disorder prediction 149 164 - -
Mtr1g1468 244 PANTHER GATA TRANSCRIPTION FACTOR 7 239 - -
Mtr1g1468 244 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Mtr1g1468 244 MobiDBLite consensus disorder prediction 131 167 - -
Mtr1g1468 244 CDD ZnF_GATA 173 221 IPR000679 GO:0006355|GO:0043565
Mtr1g1468 244 MobiDBLite consensus disorder prediction 214 244 - -
Mtr1g1468 244 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Mtr1g1468 244 Gene3D - 169 240 IPR013088 GO:0006355|GO:0008270
Mtr1g1468 244 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Mtr1g1468 244 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1468 Mtr-Chr1 18078391 18081465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1468 170 244 C2C2-Gata Transcription Factor Family AT3G24050 80.000 6.13e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr1g1468 GATA 1.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1468 - - gmx:100784527 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1468 1 18078391 18081465 Mtr1g1468 1 18078391 18081465 ECH