Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1466 ATGATAAAACAAGGAGGAGTATATAGGACCACGGACGAGCAAAGAGCAAAACCTGAAGCAGCCGGAGTCTTCAATTTCTATTCAAAAGGGGTAATGGAGTCTCTGATGATTTCCGAACCTAATTTGCTTGATTGCTGCAAATGTTTTGAACCCTTAACTATTCCCATCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTACGAAACTTAAGAACAAGTGTCACGAGTGCTCATTGCACATTAGCTCAAAACGTTGCAAAGCCATTGAGAATCTATTGCTATCTATCAAAATGTCATGTTCGAATGCAAAGCATGGTTGTAAGGAGAAGATAAGTTACACCGATAGGAAGCATGAAGAAGAATGCGTCTACGTACTATGTTACTGCCCCCTTTCAGGATGTGACTTTGCTGCATCATCAGAAGTGTTGTCCAACCATTTCAGGCATAAACATGGGGATTCTATAATCAAATTTTCTTATGGTTACTCCTTCACTGTCTCCTTGAAGTCTAATGATGAAATTATTGTTCTTCAAGAGGAAAATGATGGTAAACTATTTATTCTCAATAATAGAACTACGCTTTTGGGAAATGCAGTCAATCTTTGCTGCATTGGTCCTAACTCTTCTGAGTCCAACTATAATTATGATATATTGGCTAGGTCTCAGAATTGCATACTGAAATTACAGTCTTTTGCGAAGAACGTCCAACAAGTTACTTTAGCAACTCTTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCTTCTGAACCTCTCAAGCTAGATATTTGCATAACCCGCACGATACAAATCTACATAATGACCCAGACTAGTAGGAGGTACCCTCTAAGGGTTGAAAGTTCAGACACAATAATCGATGTGAAGAAGAAGATTCTTGACAAGGAAAATATCCCGGTGCACCAGCAACGTTTGATCTTTGGCGGTAAGGTACTAGATGAGGACCGGACCCTTGTCGATTACAACATCAAAGAGAAGTCAACCATCCACGTCTGCCTCCGCCTCCTTGGGAACTAG 1041 0.4015 MIKQGGVYRTTDEQRAKPEAAGVFNFYSKGVMESLMISEPNLLDCCKCFEPLTIPIFQCDNGHIVCSTCCTKLKNKCHECSLHISSKRCKAIENLLLSIKMSCSNAKHGCKEKISYTDRKHEEECVYVLCYCPLSGCDFAASSEVLSNHFRHKHGDSIIKFSYGYSFTVSLKSNDEIIVLQEENDGKLFILNNRTTLLGNAVNLCCIGPNSSESNYNYDILARSQNCILKLQSFAKNVQQVTLATLSSELLVIPFGSSEPLKLDICITRTIQIYIMTQTSRRYPLRVESSDTIIDVKKKILDKENIPVHQQRLIFGGKVLDEDRTLVDYNIKEKSTIHVCLRLLGN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1466 346 ProSiteProfiles Ubiquitin domain profile. 271 346 IPR000626 GO:0005515
Mtr1g1466 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 32 271 IPR044286 -
Mtr1g1466 346 SMART ubq_7 271 342 IPR000626 GO:0005515
Mtr1g1466 346 PRINTS Ubiquitin signature 281 301 IPR019956 -
Mtr1g1466 346 PRINTS Ubiquitin signature 302 322 IPR019956 -
Mtr1g1466 346 PRINTS Ubiquitin signature 323 344 IPR019956 -
Mtr1g1466 346 ProSiteProfiles Zinc finger SIAH-type profile. 98 155 IPR013010 GO:0008270
Mtr1g1466 346 SUPERFAMILY TRAF domain-like 98 269 - -
Mtr1g1466 346 Pfam Seven in absentia protein family 88 240 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr1g1466 346 Gene3D - 266 346 - -
Mtr1g1466 346 ProSitePatterns Ubiquitin domain signature. 297 322 IPR019954 -
Mtr1g1466 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 150 IPR013083 -
Mtr1g1466 346 SUPERFAMILY Ubiquitin-like 255 346 IPR029071 -
Mtr1g1466 346 Pfam Ubiquitin family 273 343 IPR000626 GO:0005515
Mtr1g1466 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 32 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1466 Mtr-Chr1 18064916 18070440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1466 271 346 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 57.895 2.94e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1466 K04506 - mnt:21409755 245.743