Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1465 ATGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGTAAACTATTTATTCTCAATAATAGAAGTATGCTTTTGGGAAATGCAGTCAATCTTTGCTGCATTGGTCCTAACTCTTCTGAGTCCGACTATAGTTATGATATATTGGCTAGGTCTCAGATATCCAAACTGAAATTACAGTCTTTCGTGAAGAACGTCCAACAGGTTCCTTTAGCAACTCTTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCTTCTGAACCTCTCAAGCTAGATATTTGCATAACCCCCAGGATGCAAATCTACATAAGGACCCAGACTGGAAAGACATACCCCCTGAGGGTGGAGAGTTCAGACACGATAATGAATGTGAAGAAGAAGATTCTTGACAAGGAAGATATTGCAGTGCACCAGCAACGTCTGATCTTTGACGGTAAGCAACTAGAGGACAACCGGACCCTTGCCGATTACAACATCCAAGAGAAGTCAACCATTCATCTCTGCCTCCGCCTCATTGGGAACTAG 531 0.4162 MKSNDETIVLQEENDGKLFILNNRSMLLGNAVNLCCIGPNSSESDYSYDILARSQISKLKLQSFVKNVQQVPLATLSSELLVIPFGSSEPLKLDICITPRMQIYIRTQTGKTYPLRVESSDTIMNVKKKILDKEDIAVHQQRLIFDGKQLEDNRTLADYNIQEKSTIHLCLRLIGN* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1465 176 SMART ubq_7 101 172 IPR000626 GO:0005515
Mtr1g1465 176 ProSitePatterns Ubiquitin domain signature. 127 152 IPR019954 -
Mtr1g1465 176 PRINTS Ubiquitin signature 111 131 IPR019956 -
Mtr1g1465 176 PRINTS Ubiquitin signature 132 152 IPR019956 -
Mtr1g1465 176 PRINTS Ubiquitin signature 153 174 IPR019956 -
Mtr1g1465 176 SUPERFAMILY Ubiquitin-like 85 176 IPR029071 -
Mtr1g1465 176 Pfam Ubiquitin family 103 173 IPR000626 GO:0005515
Mtr1g1465 176 PANTHER - 98 175 - -
Mtr1g1465 176 PANTHER UBIQUITIN 98 175 - -
Mtr1g1465 176 Gene3D - 97 176 - -
Mtr1g1465 176 ProSiteProfiles Ubiquitin domain profile. 101 176 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1465 Mtr-Chr1 18060261 18061551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1465 101 176 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 71.053 9.51e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1465 - K08770 ppp:112289942 108.227