Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1461 ATGTTAGAAACATTCTGTATTGGAATTCTGAAGAAGCTTGATTATGGATTGGTTCATTGCCAGGCTTTGGTTTTGGCCCCAACCATGGAGCTGGTTTTACAGATTAAGGAGGTTATGCAAGATCTTGGTAGATTCCATGGTGTAAAGATTCATGCATGTGTCGGGGGGACAAGTGTTCCGAAGGAGGATCGTCAGCGCTTTCTCAAAGTTGGTGGTGTTCACATTATTGTTGGTACTCCGAGGTGTGTGTATGACATGCTGCAGAGGGGGCGTACTCGCCTAGATTGCATAAAGATGTTTGTTATGGATGAGGTTGATCAAATGCTTTCACTTGGTTTCAAGGATAAGATCGATGAAATCTTCAAGCTACTACCATGCAAAATTCAGGTTGGAGTAATCTCTGCTACAATGCCACCTGAAGCCCTTGAGATTACTAGGAAGTTCATGAAAAAGCCTGTGACAATTCAGGCAAAGCCTGATGAGCTGACCCTTGAGGGTATCAAGCAGTTTTATGTCGATGTTGAGAAGGAAGAGTGGAAGCTAGAGACACTATGCGACATCTTTGAGCTGACCGTTAAAGCTAAATCGATCACTCATTGTATTGTCTTTGTGGATACCAGGTGCAAAGTGGATTGGCTCACGGACAAGATGCAAAGCAGAGATCATAAAGTGTCAGTCATCCAGAGTGACATGGACCAGAACACTAGGGATATCATTGTGCGCGAGTTCTTTTCCCAGTCTGGCTCTCCTCATGTTCTCATTACCACAGACCCCTTGGTTTGTGGTACAGATGTGCATAAAGTATCTCTGATCGTAAACTATGATCTCCCAGCTGCGCCTGAAAACTATCTTTATCGTATAGGCCGCCGGAGTGGGCAATTTGGAAGATGTGTTGCTATAAACTTTATGACAAAGGATGAGGCTACAATGATCATAGATATTCAGAAATTCTACAATATGGTTATAGAGGAGCTGCCATATAATTTTGATGAGTTGCTCTGA 1002 0.4311 MLETFCIGILKKLDYGLVHCQALVLAPTMELVLQIKEVMQDLGRFHGVKIHACVGGTSVPKEDRQRFLKVGGVHIIVGTPRCVYDMLQRGRTRLDCIKMFVMDEVDQMLSLGFKDKIDEIFKLLPCKIQVGVISATMPPEALEITRKFMKKPVTIQAKPDELTLEGIKQFYVDVEKEEWKLETLCDIFELTVKAKSITHCIVFVDTRCKVDWLTDKMQSRDHKVSVIQSDMDQNTRDIIVREFFSQSGSPHVLITTDPLVCGTDVHKVSLIVNYDLPAAPENYLYRIGRRSGQFGRCVAINFMTKDEATMIIDIQKFYNMVIEELPYNFDELL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1461 333 Pfam DEAD/DEAH box helicase 5 140 IPR011545 GO:0003676|GO:0005524
Mtr1g1461 333 Pfam Helicase conserved C-terminal domain 180 289 IPR001650 -
Mtr1g1461 333 Gene3D - 6 162 IPR027417 -
Mtr1g1461 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 314 IPR027417 -
Mtr1g1461 333 SMART ultradead3 1 170 IPR014001 -
Mtr1g1461 333 Gene3D - 163 333 IPR027417 -
Mtr1g1461 333 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 166 333 IPR001650 -
Mtr1g1461 333 PANTHER EUKARYOTIC INITIATION FACTOR 4A-1 2 333 - -
Mtr1g1461 333 PANTHER RNA HELICASE 2 333 - -
Mtr1g1461 333 SMART helicmild6 211 292 IPR001650 -
Mtr1g1461 333 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 155 IPR014001 -
Mtr1g1461 333 CDD SF2_C_DEAD 167 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1461 Mtr-Chr1 18021747 18023083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1461 4 333 Eukaryotic Initiation Factors Gene Family AT1G72730 65.861 3.11e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1461 K03257 - ming:122060600 427.943