Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1450 ATGACTAACAATGCAAAGGAGTATCCTGGCTTTTTCAAAGTCTTCCTTAAAGAGAAGCACTCTGAGAGAATGCTTATCCCAAATGCTTTTATGAACTTGGTGCATTCAAAAAGAAGGGTAATAAAGGATTTTATCCTAAGAGATCGTAGAAGAAGAGATTGGTATGTCAAAGCGCGTCGTATTGGTGACGAGTTCTATTTTGATGATGGCTGGAAGAAATTTAGACAAGAAAATTGTTTAGTGGAGAATGACTTCCTTGTTTTTACTCATATTGAAAACAATGTATTCAAATTCAAAATTCTTGAACTATCATCAATGTGTGAAAAGATGCCGGTGATGGAAGATGAGGAAAATAATAATATGATGGAAGATGAGGAAGAGGAAAAGGATAGTGATGATGTTGATTATGATGACAATGATGATCATGATGCTGAAGAGGGTAATGATAGTGATGATGATGATGATGATGGATCTGAGAATATAAGGAAAGAAACACAGAGTGAAAATGTGTACAAGGAAAACAGTAAAAGTGGACATCAACATTGTAGAACCTGCAAAGCATGGGACATTGGAAGCAGCTCTGCAGGTTCAAACCTTGAAGACGATGAAATTGATGCTGAAATGTACATTCAACCGGGAAATCCACACTTCATTGCAAAACATAGTCTTTATAGACCCAATGAATTGCATTTTCCGAAGAATGTAATTAAAGATTTCTGTGTTTGCTTCACAAAATATGTCAACCTTGTATGTTGCCACTGCAAGGATATTAAAAGAAATGAAATAGAAGCCTATCATCACATCTTGCCACAAATCAGCACAAGACATACCGAAAAGAGAGGTGAAATACGTACTTGGAAAAATGGCCGAGTCTTGGTGCTAGGGTGGGAAGATTTTTGTAGAAAGTGCAAGATAACAGAAAATGATAGATGCTTGTGTGAACTTGTAATGCGCAACGGAGAAGCAATAGAAATGATAAGGGTTCACATTGTTAGGAAGGTTAACAAGAAATATAACCAAATTATGACTAACAATGCCAAGGAGTACCCTAACTTCTTCAAAGTCTTCCTCACAAAGAAGCACTCTGATAGAATGCTTATCCCAACGGCTTTTGTGAAATTGATGATTTCAAAACAAAGGCTATTGAAGGATTTTATCCTAAGAGATCATAGAGGAAGTGATTGGCATGTCAAAGTGTGTTCTATTGGCAACAAACTTTATTTTGATGATGGTTGGAAACTATTCAGAGAAGAAAATTCTTTAGAGGACAATGACTTCCTTGTTTTCACGCATATTGAAAACAATGTATTCAAGTTCAAAATCCTTGAACTATCATCAATGTGTCAAAAGATGAAGGTAATGGACGAGGAGGAAAATACTAATACGATAGAGGATGAGGAAGAGGCAGATGGTGATGATGATTACACAATGGTAGAGGAAGAAGAAGATAGTGATGATAACGATGACGTTGATGAGGAGGAGGACGAGGATGTTGCTGATATAATAATGAAAGAAAAAAGGAATAAAGGAGCTGGCAAGGGAATCAACAGAAGTTGTGAACATCAACATGGTAGAACCTTCAAAAGATGGAGCATTGGAAGTAGCTCTGCAGCTCCAAATCTTGAAGATGATGAAATTGATGCTGAAATGTATATTCAGCCAGGAAATCCATACTTCTATGCAAAACATTATGACTACAGACCAAACATATTGAATATTTCGAAGAATGTCATCAAGGATTTCTGCCTTTGCTTTACAAAGCATATCACCATTGTATGTTGCCACTGCAAGGATGTTCAAAGTAACGGAATAGCAGCCTATCGTCATATATTGCCGCAGATGAGAACAAAACATATTGAAAAGAGAGGAGAAGTACGTAAATGGAAAGATGGCCGAGTATTTGTGCGAGGGTGGGAAGATTTCTGCAGAAAGAGCAAAATCACAGAAAATGATAAATGCTTGTGTGAACTTGTGTTGCGTAACGGCAAATCAATTGAAATGCTAAGGGTGCACGTTGTTAGGGAGAAATGA 2031 0.3698 MTNNAKEYPGFFKVFLKEKHSERMLIPNAFMNLVHSKRRVIKDFILRDRRRRDWYVKARRIGDEFYFDDGWKKFRQENCLVENDFLVFTHIENNVFKFKILELSSMCEKMPVMEDEENNNMMEDEEEEKDSDDVDYDDNDDHDAEEGNDSDDDDDDGSENIRKETQSENVYKENSKSGHQHCRTCKAWDIGSSSAGSNLEDDEIDAEMYIQPGNPHFIAKHSLYRPNELHFPKNVIKDFCVCFTKYVNLVCCHCKDIKRNEIEAYHHILPQISTRHTEKRGEIRTWKNGRVLVLGWEDFCRKCKITENDRCLCELVMRNGEAIEMIRVHIVRKVNKKYNQIMTNNAKEYPNFFKVFLTKKHSDRMLIPTAFVKLMISKQRLLKDFILRDHRGSDWHVKVCSIGNKLYFDDGWKLFREENSLEDNDFLVFTHIENNVFKFKILELSSMCQKMKVMDEEENTNTIEDEEEADGDDDYTMVEEEEDSDDNDDVDEEEDEDVADIIMKEKRNKGAGKGINRSCEHQHGRTFKRWSIGSSSAAPNLEDDEIDAEMYIQPGNPYFYAKHYDYRPNILNISKNVIKDFCLCFTKHITIVCCHCKDVQSNGIAAYRHILPQMRTKHIEKRGEVRKWKDGRVFVRGWEDFCRKSKITENDKCLCELVLRNGKSIEMLRVHVVREK* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1450 676 MobiDBLite consensus disorder prediction 459 495 - -
Mtr1g1450 676 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Mtr1g1450 676 PANTHER B3 DOMAIN-CONTAINING 3 334 - -
Mtr1g1450 676 PANTHER B3 DOMAIN-CONTAINING 341 674 - -
Mtr1g1450 676 SUPERFAMILY DNA-binding pseudobarrel domain 618 674 IPR015300 -
Mtr1g1450 676 CDD B3_DNA 9 101 IPR003340 GO:0003677
Mtr1g1450 676 SUPERFAMILY DNA-binding pseudobarrel domain 348 443 IPR015300 -
Mtr1g1450 676 Gene3D - 3 107 IPR015300 -
Mtr1g1450 676 Gene3D - 343 448 IPR015300 -
Mtr1g1450 676 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 341 674 - -
Mtr1g1450 676 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 3 334 - -
Mtr1g1450 676 SUPERFAMILY DNA-binding pseudobarrel domain 276 332 IPR015300 -
Mtr1g1450 676 MobiDBLite consensus disorder prediction 121 158 - -
Mtr1g1450 676 Pfam B3 DNA binding domain 352 441 IPR003340 GO:0003677
Mtr1g1450 676 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Mtr1g1450 676 MobiDBLite consensus disorder prediction 121 176 - -
Mtr1g1450 676 MobiDBLite consensus disorder prediction 159 176 - -
Mtr1g1450 676 SMART B3_2 352 445 IPR003340 GO:0003677
Mtr1g1450 676 SMART B3_2 11 104 IPR003340 GO:0003677
Mtr1g1450 676 Gene3D - 200 337 IPR015300 -
Mtr1g1450 676 Gene3D - 542 676 IPR015300 -
Mtr1g1450 676 CDD B3_DNA 350 442 IPR003340 GO:0003677
Mtr1g1450 676 MobiDBLite consensus disorder prediction 456 495 - -
Mtr1g1450 676 ProSiteProfiles B3 DNA-binding domain profile. 350 445 IPR003340 GO:0003677
Mtr1g1450 676 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1450 Mtr-Chr1 17931174 17939395 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1450 350 675 B3 DNA Binding Superfamily AT3G06160 24.405 5.29e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1450 B3 5.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1450 - - mtr:MTR_1g046320 622.468