Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1446 ATGGCCAAGGATTACCCAGATTTCTTCAAGGTTTTTTCCACAGAGAAGCACACTGAAAGAATGCGTATCCCAAATGCTTTTGTGAACTTGATGCGTTCAAAAAGGAAGGTAATAAAGGATTTTATCCTAAGAGATCGTAGAGGAAGAGATTGGCATGTCAAAGCTCGTCTTATTGGCGATGAGCTTTATTTTGACGGTGGCTGGAAGCAATTTAGAGAGGAAAATTCTTTAGAGGAGGATGATTTCCTTGTTTTTACACATATTGAAAATACCGTATTCAGGTTCAAAATTCTTGAACTATCATCGATGTGTGAAAAGAAGAAGGTAAGTGTCGTGGAGGAAAATAACAATATGGAGGATGAGGAAGAGGTAAATGATGGTGATGACGATGATGAGGATGATGATTATGAATATGATGCTGCTGCTGCTGCCGATGATGATGGTGATGACGACGACGAGAATGAAAGAATGTATAAGGAAATTAGTAGAAGTAAACATCAACATTGTAGAACCTGCTGCAAGTGCAAAGCTGGGAACATTGGGAGCAGCTCTGCACGATCAAAACTTGAAGATGACGAAATTGATGCTGAAATATATATTCAACCGGGAAATCCTCACTTTATTGCAAAATATATTCATTCCAGACCTAATGAATTGTTTATTCCAAAGAATGTTATCAAGGATTTCTGCCTCTGCTTCACAAAACATGTCACCCTTGAATGTTGCCACTGTAAGGACATTCAGAGCAATGACTTAGCAGCCTATCATCACATCTTGCCACAAATCAGCACAATACATATCGAAAAGAGAGGCCAAGTACGTACATGGAGAGATGGTCGAGTACGTGTGCTAGGGTGGGAAGATTTTTGTAGAAAGAGCAAGATCACAGAAAATGATAGTTGCTTATGCGAGATTGTGCTGCGTGAAGATGGAACAATCAGAATTTTAAGGGTGCACGTTGTTAGGAAGGAATGA 975 0.3949 MAKDYPDFFKVFSTEKHTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKARLIGDELYFDGGWKQFREENSLEEDDFLVFTHIENTVFRFKILELSSMCEKKKVSVVEENNNMEDEEEVNDGDDDDEDDDYEYDAAAAADDDGDDDDENERMYKEISRSKHQHCRTCCKCKAGNIGSSSARSKLEDDEIDAEIYIQPGNPHFIAKYIHSRPNELFIPKNVIKDFCLCFTKHVTLECCHCKDIQSNDLAAYHHILPQISTIHIEKRGQVRTWRDGRVRVLGWEDFCRKSKITENDSCLCEIVLREDGTIRILRVHVVRKE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1446 324 ProSiteProfiles B3 DNA-binding domain profile. 6 101 IPR003340 GO:0003677
Mtr1g1446 324 PANTHER B3 DOMAIN-CONTAINING 1 322 - -
Mtr1g1446 324 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Mtr1g1446 324 Gene3D - 187 324 IPR015300 -
Mtr1g1446 324 SUPERFAMILY DNA-binding pseudobarrel domain 4 99 IPR015300 -
Mtr1g1446 324 MobiDBLite consensus disorder prediction 111 135 - -
Mtr1g1446 324 MobiDBLite consensus disorder prediction 116 135 - -
Mtr1g1446 324 Gene3D - 1 104 IPR015300 -
Mtr1g1446 324 CDD B3_DNA 6 98 IPR003340 GO:0003677
Mtr1g1446 324 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 1 322 - -
Mtr1g1446 324 SMART B3_2 8 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1446 Mtr-Chr1 17821569 17824433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1446 6 322 B3 DNA Binding Superfamily AT3G06160 23.867 1.11e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1446 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1446 - - mtr:MTR_1g046320 424.476