Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1421 ATGTATTGGCGTGGAGTGATGGCAGGCCAAATTGGTCATGGTATCATGGAGGAAGAGGTTTGGAGGAAAGGGCCATGGACTGCTGAAGAGGATAGGTTGTTGATTGACTATGTTAGACTGCATGGTGAAGGAAGATGGAACTCTGTTGCTCGGCTTACAGGATTGAAAAGGAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTATCTAAGACCAGATCTCAAAAGGGGTCAAATAACACCACAAGAAGAAAGCATAATATTAGAGCTTCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGTTTACCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAGGACTCATTTCAAGAAAAAAGCAAAAAATCCCTTTGATGCTGCCGAAAAGGCGAAAAACCGATTCCTGAGAAAGCAGTTATTTCACCAGCAGCAGCAACAGCAACAATTGCAACAGCAGCAGCAGCAACAACAACTGCAATTCAACTTAGACATGAAAGGTGTCATGTCCATGTTTGAGGAAAACAATAGCCATAGAGTTCCTTATATATCTCAAGCTAGACAAGAAATTTTCAACATGTATCCAAATACAACAGAGGATCAGGGTTACTTTATGCTCAATGGAAACTCTTCTGTACCTAATGCAACAGAAGATGATACTTTGTTGGATGGTCTGTGGAATTTGGATGATGTTCAAGGAAATTTCAGTGTTGCTAATGCAACAAACAAAGCTGGTCTATACAATTTAGTTGCTCCTTACTGTTAG 777 0.4054 MYWRGVMAGQIGHGIMEEEVWRKGPWTAEEDRLLIDYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPFDAAEKAKNRFLRKQLFHQQQQQQQLQQQQQQQQLQFNLDMKGVMSMFEENNSHRVPYISQARQEIFNMYPNTTEDQGYFMLNGNSSVPNATEDDTLLDGLWNLDDVQGNFSVANATNKAGLYNLVAPYC* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1421 258 SMART sant 22 72 IPR001005 -
Mtr1g1421 258 SMART sant 75 123 IPR001005 -
Mtr1g1421 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Mtr1g1421 258 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Mtr1g1421 258 CDD SANT 80 121 IPR001005 -
Mtr1g1421 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Mtr1g1421 258 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Mtr1g1421 258 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mtr1g1421 258 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mtr1g1421 258 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Mtr1g1421 258 Gene3D - 80 124 - -
Mtr1g1421 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr1g1421 258 Gene3D - 23 75 - -
Mtr1g1421 258 CDD SANT 25 70 IPR001005 -
Mtr1g1421 258 PANTHER MYB TRANSCRIPTION FACTOR 4 251 - -
Mtr1g1421 258 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1421 Mtr-Chr1 17513340 17515211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1421 16 258 MYB Transcription Factor Family AT4G13480 54.887 1.21e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g1421 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1421 K09422 - gmx:100795981 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1421 1 17513340 17515211 Mtr1g1421 1 17513340 17515211 ECH