Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1417 ATGGCCACTGCAGCAGGCATGGCCTCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTACGTTCCAAAAACTCCTCATTAGATACATCTTCAAACCGCATGTTTGTATCTTTGATCTCACAATCCTCAGTGGAACCTTTGTCCATTGGTACAACTGTTTCACACAAGCTATGGTTTCCTAGAATTTCTGTTGCTGTTGCACAGGAAGAGGCTGTTGTGGCTGTTGAGGATGAAGAGAAAGTTGTAGTGGAAGAGGAAGAAAAAGAAGAAGAAGAAGTAGTAGAAGAGAAGGAGAATATTGGAGGGGAAACTGTAGCTGAAGTAGACACTAGGACTAAGCTTTATTTTGGTAATTTGCCTTATAGTGTTGATAGTGCACTACTTGCAGGGCTAATTGAGGAGTATGGTAGTGCAGAATTGATTGAGGTTCTTTATGACAGAGACACCGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTGTTGAAGATTGTAACGCAGTAATTCAAAATCTTGACGGGAAAGAGTTCATGGGGCGAACCTTGCGGGTGAATTTCTCTGACAAACCTAAACCAAAAGAACCATTGTATCCTGAAACTGAGTACAAGCTTTTTGTTGGGAACTTGGCTTGGACAGTAACTTCTGAGAGTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATTTGATGGCGAAACCGGAAAGTCTCGTGGCTATGGCTTTGTTTCCTATGCCACTAAATCAGAAATGGATACCGCCCTTGCAATCATGGATAATGTGGAACTAGAAGGACGAACATTGCGCGTAAGCTTGGCTCAAGGAAAACGTTCATAA 858 0.4196 MATAAGMASLFSSSINTVKCLRSKNSSLDTSSNRMFVSLISQSSVEPLSIGTTVSHKLWFPRISVAVAQEEAVVAVEDEEKVVVEEEEKEEEEVVEEKENIGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1417 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Mtr1g1417 285 SUPERFAMILY RNA-binding domain, RBD 199 284 IPR035979 GO:0003676
Mtr1g1417 285 PANTHER OS02G0815200 PROTEIN 2 284 - -
Mtr1g1417 285 PANTHER OS02G0815200 PROTEIN 2 284 - -
Mtr1g1417 285 SUPERFAMILY RNA-binding domain, RBD 110 196 IPR035979 GO:0003676
Mtr1g1417 285 Coils Coil 84 104 - -
Mtr1g1417 285 Gene3D - 66 193 IPR012677 -
Mtr1g1417 285 SMART rrm1_1 114 187 IPR000504 GO:0003723
Mtr1g1417 285 SMART rrm1_1 205 278 IPR000504 GO:0003723
Mtr1g1417 285 Gene3D - 194 285 IPR012677 -
Mtr1g1417 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 276 IPR000504 GO:0003723
Mtr1g1417 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 185 IPR000504 GO:0003723
Mtr1g1417 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1417 Mtr-Chr1 17459568 17462374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1417 94 283 Eukaryotic Initiation Factors Gene Family AT2G36660 27.962 1.23e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1417 - - aprc:113871254 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1417 1 17459568 17462374 Mtr1g1417 1 17459568 17462374 ECH
Mtr7g3317 7 50333447 50335711 Mtr1g1417 1 17459568 17462374 PCT