Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1414 ATGGCTCTCAACTCTTCTTCCGATAAGGTTATCACACCCACAGATGATGAACTTCTACAACAATTCCTCTACAACAAAATTCATAACAAACCTTTGCCCAATCATATCACCATTCTTGAACACGATTTGTTCGGCACTGCAAAGAATCCATGGGAGATTTGGGAAGAGTTCGGAACTTCCAACTCAAATCGTGGAAAAGACTTATACTTCTTTACAACCTTAAAGAAGAAATCTGCAACTAGCTCGCGCGTAGTTCGCACTATTGGACTTGGTAGATGGGAAGGTGAAGATTCTGGAAAAAATATATTCGCCAAAGACAAGAACCAAATCCTTGGCATGAAAAAACGTTTTCGTTTTGAGAAGAGTGACACTTCTCAAGATGGTGGATGGATTTTGCATGAATATAGCCTCCACAATTCTTTGATAAGCAATCCTTTGGACAATAATTATGTTCTATGCAGATTTAGAAAGAATTGCACTCACTTACCTGTAAGCAAAAATATCGTTGCACAAGATAAACCAAGAAAGATAGTCGTTCCTGAACCTGCGGCAATCACCATACCTGGTAAGAGAAAATATATAATTTATGAAGAACCAACAAAAGAATCAAATGGTACTGTGGTTAATACAAAGTCTCATCGTAAGGAAAAAGAAAAATATGTGGAATGGACAAAAGAGAACTTTGTTCTTGCACTCGAAGCACCCACCAAATCTGAGAACAATAACGTTTGGTTGAAGGAAAATATTGACCAAAATCCAAATAATCAACTAAACAATGGGAAAAACAAGATTGAAGATGATGGTGATGTCAATACAAGCAAAGAAGAAGATGGTGATGCTATTATGTCTTGGCCTGAGTTGTTTTCGTTGCAGCTGAGAGAGATGAATGAAGGATGCTTGATCGAAGAGGAAGATGTTCCAATGATTTCCAATCAGTTTTATAAGGACTTATTGTCGGAAAATATTAATATAAATTAA 978 0.3671 MALNSSSDKVITPTDDELLQQFLYNKIHNKPLPNHITILEHDLFGTAKNPWEIWEEFGTSNSNRGKDLYFFTTLKKKSATSSRVVRTIGLGRWEGEDSGKNIFAKDKNQILGMKKRFRFEKSDTSQDGGWILHEYSLHNSLISNPLDNNYVLCRFRKNCTHLPVSKNIVAQDKPRKIVVPEPAAITIPGKRKYIIYEEPTKESNGTVVNTKSHRKEKEKYVEWTKENFVLALEAPTKSENNNVWLKENIDQNPNNQLNNGKNKIEDDGDVNTSKEEDGDAIMSWPELFSLQLREMNEGCLIEEEDVPMISNQFYKDLLSENININ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1414 325 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 266 - -
Mtr1g1414 325 Pfam No apical meristem (NAM) protein 12 137 IPR003441 GO:0003677|GO:0006355
Mtr1g1414 325 ProSiteProfiles NAC domain profile. 5 158 IPR003441 GO:0003677|GO:0006355
Mtr1g1414 325 MobiDBLite consensus disorder prediction 262 276 - -
Mtr1g1414 325 MobiDBLite consensus disorder prediction 249 276 - -
Mtr1g1414 325 SUPERFAMILY NAC domain 12 156 IPR036093 GO:0003677|GO:0006355
Mtr1g1414 325 Gene3D NAC domain 14 161 IPR036093 GO:0003677|GO:0006355
Mtr1g1414 325 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1414 Mtr-Chr1 17443310 17445179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1414 13 154 NAC Transcription Factor Family AT5G13180 35.616 5.71e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g1414 NAM 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1414 - - mtr:MTR_1g045470 652.129