Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1402 ATGAACTGCTCCATTTCTGGTGAGGTTCCAGATGAGCCTGTGGTGTCAAAAAGCTCTGGGCTTTTGTTCGAGAAGAGATTAATCGAGAGGCATATAATGGATTTTGGTAAGTGTCCAGTTACAGGAGAGCCACTTACTATGGATGATATTGTGCCGATCAAAACAGGCAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCAAGCATTCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAGTTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATACCAGCATGATGCTGCTTGCCGCGTGATTGCAAGGCTTAAAAAGGAACGAGACGAAGCTAGGTCGATACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCTACTCCAAATTCTGTGACAGCTAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGACGAGGAGTTGGCACCTAATGCGAAGAAATTACATCCTGGAATATCTTCTAGTATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCAGGGAAGAGGAAAAAGCGAGAGATTCCTGCGACTTTGGCTTCTGTTGATGCTCTAGAGACATATACCCAGATATCTAGCCATCCCTTAAACAAAACTAGCAAACAGGGCATTATAGCTCTTGATATCCTTCATTCTAAGGACTTAATCGCAACTGGAAATATTGATACCAATGCTGTTATTTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCACCGGTCACTCTAAAAAGGTAACAAGCGTGAAGTTTGTAGGTCAGGGTGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGACGATGGTCACTATAACTGCAAACAGATTTTGAAGGATCATTCTGCTGAAGTGGAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCAGTTGGTGCTTTTATGAACTGTCTTCAGGAACTTGTCTGACTCAGGTTTCTGACTCTTCCGAAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTTATTCTTGGAACTGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAAGTTTGATGGACATGTGGGGCATGTAACTGCAATATCCTTTTCTGAGAATGGATACTACCTTGCGACCGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGGATTATGGCCCATATGACTCAGCAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGGAGGCTCTGATGTTAGGATATTACAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTCTTCCTGATTTATCTGGAACAGGAAAATCCACATGTGTAAAATTCGGTCCAGATTCAAAATACTTAGCAGTTGCATCAATGGACCGGAATCTTCGAATATTTGGCCAACCTGGCGAAGACATTTCTGACAAATGA 1566 0.4304 MNCSISGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIISELTDCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDLIATGNIDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGHYNCKQILKDHSAEVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVGGSDVRILQVANVKSEWNLIKTLPDLSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDISDK* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Mtr1g1402 521 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Mtr1g1402 521 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Mtr1g1402 521 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Mtr1g1402 521 Pfam WD domain, G-beta repeat 482 511 IPR001680 GO:0005515
Mtr1g1402 521 Pfam WD domain, G-beta repeat 357 381 IPR001680 GO:0005515
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Mtr1g1402 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Mtr1g1402 521 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Mtr1g1402 521 Coils Coil 115 135 - -
Mtr1g1402 521 SUPERFAMILY WD40 repeat-like 223 511 IPR036322 GO:0005515
Mtr1g1402 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 212 252 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 425 464 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 255 294 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 384 422 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 300 339 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 471 512 IPR001680 GO:0005515
Mtr1g1402 521 SMART WD40_4 342 381 IPR001680 GO:0005515
Mtr1g1402 521 SUPERFAMILY RING/U-box 1 53 - -
Mtr1g1402 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Mtr1g1402 521 MobiDBLite consensus disorder prediction 139 161 - -
Mtr1g1402 521 CDD WD40 226 511 - -
Mtr1g1402 521 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Mtr1g1402 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 517 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Mtr1g1402 521 CDD RING-Ubox_PRP19 3 54 - -
Mtr1g1402 521 Gene3D - 200 513 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1402 Mtr-Chr1 17275559 17285570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1402 1 517 U-box Gene Family AT1G04510 73.654 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1402 K10599 - gmx:100527039 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1402 1 17275559 17285570 Mtr1g1402 1 17275559 17285570 ECH