Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1401 ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTGACAAGAGAGCTTGCTGAAGATGGTTATTCTGGTGTTGAAGTTAGGGTTACCCCTATGCGCACTGAGATCATCATCAGGGCTACTCGTACCCAAGCTGTTCTCGGCGAGAAGGGAAGGAGGATTAGAGAGCTGACCTCAGTTGTGCAGAAGAGGTTCAAGTTTCCTGAAAACAGTGTTGAGCTTTACGCTGAGAAGGTCAACAACAGGGGACTTTGTGCCATTGCTCAGGCTGAGTCTCTCCGCTACAAGCTTCTCGGCGGTCTTGCTGTTCGCAGGGCCTGCTATGGTGTGTTGAGGTTTGTCATGGAAAGTGGTGCCAAGGGTTGTGAGGTTATTGTCAGTGGAAAATTGAGGGCCCAAAGAGCCAAATCCATGAAGTTCAAAGACGGTTACATGATTTCTTCTGGACAACCAGTCAAGGACTACATTGACTCTGCTGTGAGACATGTTCTCCTTAGACAGGGTGTTCTCGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCTAAAGGAAAGCAGGGCCCTAAAACTCCCCTCCCTGATATTGTCACCATTCACACTCCAAAGGAAGAGGAGGAGTACATCAGGCCTGCTGCTGTTGTGGCCAATGATATCGAGGTCCCTGTCCCAGTCCCTGTTGTTTGA 720 0.4889 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPVV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1401 239 CDD 40S_S3_KH 15 95 - -
Mtr1g1401 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Mtr1g1401 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
Mtr1g1401 239 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Mtr1g1401 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Mtr1g1401 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Mtr1g1401 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Mtr1g1401 239 Gene3D - 1 91 IPR015946 -
Mtr1g1401 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Mtr1g1401 239 Gene3D - 93 219 IPR036419 -
Mtr1g1401 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Mtr1g1401 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1401 Mtr-Chr1 17250440 17253455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1401 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.841 3.70e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1401 K02985 - gmx:100800747 452.595