Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1392 ATGGAATTAGAGATGATAACTTCTAGTGAAGATAGTGATGAGCAAGAAGTTCAAGATGAATGTATAGTAACCAAGAGATCTTATGATTGCACATTTTGCAAAAGGGGTTTCACTAATGCTAGGGCATTAGGAGGCCACATGAATATTCATAGGAAAGAAAGAACAACTTATAAGGCCAAACAAGGCACACCCAATTCCTCACCTTTTGTTCCAGCAGTTGTTTCAAGCCAACCTTCAACTTATTACTGCATTTTAGAGCCTCCTAGGAACTATGACATGTATCATCAAACATCAAAAACAAACCCTAGAAACTCTCCACCTACATTTCAATATGATTTTCTTAACACAAGCTCTCAATCTTTGTTGGGAACCAATTTGAGTCTCCAAATTGGTTCAAGCCATAAGGGCAATGATCAAGTTTGGAGAGGAATTGAGAAAGATGGTGAAGGGGTGGACCTAGAGCTTAGGCTTGGTCACGATTCATACTCAAACTACTAA 498 0.3855 MELEMITSSEDSDEQEVQDECIVTKRSYDCTFCKRGFTNARALGGHMNIHRKERTTYKAKQGTPNSSPFVPAVVSSQPSTYYCILEPPRNYDMYHQTSKTNPRNSPPTFQYDFLNTSSQSLLGTNLSLQIGSSHKGNDQVWRGIEKDGEGVDLELRLGHDSYSNY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1392 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Mtr1g1392 165 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Mtr1g1392 165 Gene3D Classic Zinc Finger 8 68 - -
Mtr1g1392 165 PANTHER OS07G0101800 PROTEIN 7 161 - -
Mtr1g1392 165 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 161 - -
Mtr1g1392 165 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1392 Mtr-Chr1 17057813 17058504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1392 19 71 C2H2 Transcription Factor Family AT3G09290 49.057 1.57e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1392 - - mtr:MTR_1g044225 343.199