Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1391 ATGTATAAAGGAACAGCATCTAGATTCTTAATTTTCCTGTTCTTGTTGGGTGTATCAGCAACTGTTAATGGATTTTCTAAATGCAACTGTGACGATGACACGAGCTGGTGGACGATTGAGAAGATTCTAGAATGGCAGAAAGTCGGTGATTTTCTGATCGCGGTGGCATACTTCTCGATCCCTATTGAGCTTCTTTATTTCATCAGTTGTGCAAACATTCCATTCAAATGGGTACTTTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTTAATAGCTGGACTTATGGACCCCACACATTTCAAATCATGCTGACACTTACTGTCTTGAAAGTCCTCACTGCATTGGTTTCATGTGCAACTACCATAACCCTCATCACTTTGATCCCTATGCTTCTTAAAGTAAAGGTTCGAGAGTTCTTGCTGAAGCGAAAGGCGAGAGAGCTTGGAATCGAGTATGGTATGATAATGAAACAGAACGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCACTCGATAGACATGAGATTTTGTATACTACCATGGTTAAATTGTCGGAAACTTTAGGGTTGCAGAACTGTGCTGTGTGGATGCCTAATGTTGACAAAACGGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACCGATCACTGATCTGGATGTTGTAAGAGTCAAGGGAGATAATGTAGTGCATATGATTGATTCTGACTCGCTGCTTGCTGCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCAATCCGAATGCCAATGCTTAGTGTTAGCGATTTCAAAGGTGGGACGCCTGAGGTAACGGAAGCCTGTTACGCAATACTTGTTTTGGTACTTCCTAGTGAAGAGGCTAGATCTTGGAGCAATCAAGAGCTTGAGATTATTAAAGTTGTTGCTGATCAGGTAGCCGTGGGTCTTTCTCATGCCGCGATTCTCGAAGAATCACAACTTATGAGAGAGAAATTGGAGGAGCGAAATCGAGCATTGCAACAAGAGAAAAGGAACGCTATGATGGCGAGCGAGGCTAGAGCAGTTTTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGATTGCTTTCAATGATGCAAGATGAGAATTTGAAGAGTGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCGGCGTCGTATCGAACTTGATGAATGATGCTATGGACAATTCAGATAGGGACGGTCGAGGTGGAAGATTTCCTTTGGAGATGAAATGTTTTGGTTTACATAACATGTTAAAAGAAGCAGCTTGCATTGCCAAGTCTATGGCTTTATGTAAGGGTTTTGGATTTAAGGTTGAGGTTGATAGGTCTTTGCCTAACTATGTTATCGGTGACGAGAAGAGGGTTTTTCAGGTGATTTTGCACATGGTTAGGAACTTGATTGATGGTAACAATGGGGGAGGGATTCTTGTGTTTCAAGTTTTGGCAGAATCTGGAAGTCGAGGAAGGAGTGAACCTGGATATGCAACTTGGAGACCAAGCTCGTCTAACGGTGATGTGCATGTTAGATTTGACATAGGGATCAATAGCAGTAATTCTGAATCAGAGACCTCAGTTACTTCAGGGAGGCTTGCAGGAAGGATGCGTACGAGTGATCGGGCACTCGAGGAAAGTTTGAGCTTCAGCATTTGCAAGAAGATAATCCAGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGTTTTCCTCAACTGATGACCCTTGCTCTTAGGTTTCAACTACGTCGTTCTACCGCTGTAACCATCTCCGAACCAGGGGAGAGTTCAGAGTCATCTGATTCAAATTCCTTGTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAACGACGATGTTAATAGAGCAGTAACACAGAAATTTCTCCGGAAACTAGGATGTATTGTTACATCTGTTTCCTCCGGATTCGAATGCCTTAGTCTCGTTGGCCATGGTGGTGCATGCCCCTTTGAAGTTGTTATTTTGGACCTTCACTTGCCTGATTTAGATGGATTTGAAGTTACTGCAAGGATCCGGAAGTCCAAAAGCCGTAACTGGCCTATCGCTGTTGCTTTATCGGCAAGCTCAGAAGAAGAATTAAGGGAAAAATGTATGCATATTGGGTTTAATGGAGTTATCCGAAAGCCGATTCTGTTGCAAGGATTCGCGGAAGAACTCCAAAAAATCCTGAAGGGAAAATAG 2283 0.4262 MYKGTASRFLIFLFLLGVSATVNGFSKCNCDDDTSWWTIEKILEWQKVGDFLIAVAYFSIPIELLYFISCANIPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMLTLTVLKVLTALVSCATTITLITLIPMLLKVKVREFLLKRKARELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHEILYTTMVKLSETLGLQNCAVWMPNVDKTAMNLTHELNGRNVNSSIPITDLDVVRVKGDNVVHMIDSDSLLAAASSGVSVDAGPVAAIRMPMLSVSDFKGGTPEVTEACYAILVLVLPSEEARSWSNQELEIIKVVADQVAVGLSHAAILEESQLMREKLEERNRALQQEKRNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKSEQKLIVDSMVRTSGVVSNLMNDAMDNSDRDGRGGRFPLEMKCFGLHNMLKEAACIAKSMALCKGFGFKVEVDRSLPNYVIGDEKRVFQVILHMVRNLIDGNNGGGILVFQVLAESGSRGRSEPGYATWRPSSSNGDVHVRFDIGINSSNSESETSVTSGRLAGRMRTSDRALEESLSFSICKKIIQSMKGNICSVPNARGFPQLMTLALRFQLRRSTAVTISEPGESSESSDSNSLFRGLQVLLADNDDVNRAVTQKFLRKLGCIVTSVSSGFECLSLVGHGGACPFEVVILDLHLPDLDGFEVTARIRKSKSRNWPIAVALSASSEEELREKCMHIGFNGVIRKPILLQGFAEELQKILKGK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1391 760 Coils Coil 334 361 - -
Mtr1g1391 760 Pfam GAF domain 182 327 IPR003018 GO:0005515
Mtr1g1391 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 508 IPR036890 -
Mtr1g1391 760 PANTHER ETHYLENE RESPONSE SENSOR 2 13 758 - -
Mtr1g1391 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Mtr1g1391 760 SUPERFAMILY CheY-like 634 757 IPR011006 -
Mtr1g1391 760 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Mtr1g1391 760 Gene3D - 328 427 - -
Mtr1g1391 760 Pfam Response regulator receiver domain 639 745 IPR001789 GO:0000160
Mtr1g1391 760 Gene3D - 430 609 IPR036890 -
Mtr1g1391 760 SMART REC_2 637 757 IPR001789 GO:0000160
Mtr1g1391 760 Gene3D - 637 760 - -
Mtr1g1391 760 SUPERFAMILY GAF domain-like 185 331 - -
Mtr1g1391 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 13 758 - -
Mtr1g1391 760 SMART gaf_1 182 338 IPR003018 GO:0005515
Mtr1g1391 760 ProSiteProfiles Response regulatory domain profile. 638 757 IPR001789 GO:0000160
Mtr1g1391 760 Gene3D - 172 327 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1391 Mtr-Chr1 17033679 17037711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1391 23 758 Miscellaneous Gene Families AT3G04580 51.946 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g1391 GAF 1.2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1391 K14509 - gmx:100802948 1037.33