Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1390 ATGAACAAACGTCCCCACACCGAACTTTTCATCAACGAAACCAAAAGAAGAGAAGAAGAAGAAGAAGACGATGAAGAAAGAGACGACGATGAACCAAAAGAAGGTGCAGTTGAAATTGGAAACCGAAGACCAAGAGGAAGACCACCCGGTTCAAAAAACAAACCAAAACCACCAATCTTCGTAACAAGAGACAGTCCAAATTCACTGAAAAGCCATGTGATGGAAGTATCCTCCGGAGCAGATGTAGCCGAAAGTGTAGCCCAGTTTGCAAGAAGGCGACAACGCGGGGTTTGTGTTCTAAGCGGTAGTGGATCAGTTGCAAATGTTACCCTTAGACAACCTGCAGCACCAGGAGCTGTTGTAGCACTTCATGGAAGGTTTGATATTCTATCATTAACCGGAGCTTTTCTACCAGGACCTGCTCCTCCAGGCGCAACCGGACTCACAGTGTACTTAGCCGGTGGACAAGGGCAAGTTGTTGGTGGAAGTGTTGTTGGACCTTTGATTGCTGCTGGACCTGTTATGGTTATTGCTGCTACTTTTGCTAATGCTACCTATGAAAGATTGCCACTTGAAGAAGATGAGGAAGACGGTGGTGGTGGTGGGGTCCATGGAGGACATCAGGTTGCTGGTGGTGGTGGTAATTCCTCTCCTCCTGGAATTGGAAGTAGTGGCGGTGGCGGTGGCGGGGGCCACATGCAGTCTAGCCATCTTCCAGATCCATCTTCTATGCCTTTGTATAATTTGCCACCAAATCTTCTTCCTAATGGTGGTCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCCTACTGA 828 0.4795 MNKRPHTELFINETKRREEEEEDDEERDDDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNSLKSHVMEVSSGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLIAAGPVMVIAATFANATYERLPLEEDEEDGGGGGVHGGHQVAGGGGNSSPPGIGSSGGGGGGGHMQSSHLPDPSSMPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1390 275 Gene3D - 70 197 - -
Mtr1g1390 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 194 - -
Mtr1g1390 275 MobiDBLite consensus disorder prediction 192 250 - -
Mtr1g1390 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 275 IPR014476 GO:0003680
Mtr1g1390 275 MobiDBLite consensus disorder prediction 1 17 - -
Mtr1g1390 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 182 IPR005175 -
Mtr1g1390 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 15 275 - -
Mtr1g1390 275 MobiDBLite consensus disorder prediction 18 32 - -
Mtr1g1390 275 MobiDBLite consensus disorder prediction 1 66 - -
Mtr1g1390 275 CDD DUF296 70 153 IPR005175 -
Mtr1g1390 275 ProSiteProfiles PPC domain profile profile. 66 205 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1390 Mtr-Chr1 16996954 16998693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1390 32 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 68.421 6.59e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1390 - - fve:101311177 298.13