Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1385 ATGGAAAACGACAATGTCGTTTTTAGAAACGGAAACCCCGTTCTCGTCGCTCAGCCTCTCACCGTCGTCCGCGCCCGAACCAGCACCGGCGGCGGCGCTCGTGTTCTTGCAACGCCGCCGAATCAAAACCCTAACTCCGACGAGTCTGATGCATGCAAAGCTTCGATCATCAAAGTCAAAGACGAACCGCGCGAATTTGAAGATGAGGCAAAATCTGTCACCGTCGCTTTTCAACCTCCGGCGGCGGAGACGGTGGTGGAGTGTAAGACGGAATCTGATGAACGACGTTCGATGCTTGCGTTCGATGATTTTTTGAAAGCTACGAACACGAAAGTTGCTTCTGTTGATGAATCGTTGAAATCAATGGAAGCTGAATCAACGATTCAAATGAAGGTAGAAAGTTCTGATGTTGATGTAGTTTTTGAGACGCAAGAATCGGTGAAATCAATGGAAGAAGTTCCTAATCTCAATGTGGTTTGCGATACACAAGAATCGGTTATGGCTGAACCGGTTAAGGTTGAACCGGTTAAGGTTGGACCGGTTAAACAACCAACATTGGCTGAACCGGTTTGTGCAGAGAAGAAAACCGTTTGTGATGATGAAGTGGAAGTGTTGAAGGTGGTGAAGGGGAAAGAAGCTGTGAGTGATGAAGTTAGGGTTTTGAAGGTGGTGAAGAAGGAGGTAGTTGAAGAGAAGAAGATCCAGATTCCGAATCTTGAGGATGGTGAGTTTCCTGTTGAGCCTGGGTGGTCATTGTTGGGAAGGAAGATTGAGATTGCTACTTCTACTGCTAAAGGAGTGAGAAGATTGGTGGATAATGAGATTATTTATTTTGATTTTCCGAATCCGCATACGTCGTATAAGTTTCAATGGATCGTTCGTGTCTCCACAAAGCGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCTAAATCTGTGATTCCCCTTGTGCAATCTGGAAATGTTAAGGTTCGAGGACGATGCATTGCTACACCGTATAAGCTTGAAATGATGCAGGAAATAATGTTGTTAGTGAGTTTTTATGTTCATCACTCTGTATTTTCCGAGTCTGTTGATACCTCTTGGAGACTAGAGGCTTGTGGTAATGTTAACTCTGCTGCATATCCACTGCTTACACTGTTAAATATGCTAGAGATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGAAAGCGGGTGCTTAAACTTGACTCAGATGAAGTTTCAGTAATTCCTGTCAATAAGCGAAGAAAAGGTGTCAGTGAGCCACTTCCAGCAACAACTGAGGATGAACAAGCACTTTCGGAGTCAGCTTTGAACAAACTTGTTGGAGCTGCAGAAGTCTTTGACCTGGAGGAGAAGGAAGCCCCAAAGACACTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAAAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGGAGGTCAATATACGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTTTGGCAGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCACTGATTCTTAGTAATCCAGGCAGGTTGAAGTCAGAAGACAGTGATGGAGAGAGCGTATATGACAATATTTTTTCAGCTAAGAGGAGAAATGTTGACCCATCGTCTAATTTAGAAGGTGGCACTTTAATTGTTTGTCCTATGGCGTTGTTGGGTCAGTGGAAGGATGAACTTGAAACGCACTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGAAGAACCAGTAATCCTGATTTGCTGTTAGACTATGATGTTGTCTTGACAACTTATGGTGTCCTATCAGCTTCTTATAAAAGTGAAAGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGAGTGGTACTAGACGAAGCTCATCATATAAAATCCCATAAAAGCCAGGTTGCTGAGGCTGCTATTGCTCTATCGTCGCACTGCCGCTGGTGTCTAACTGGAACACCACTTCAGAATAGCTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTGCAACCTTGGTGCAGCTGGCAGTGGTGGACTAAGTTGGTTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTAAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGGAGAACTAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAGCAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGAGCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACTTACTAATGCAGTTGAGACGGTGCTGCAACCATCCGTTTTTGGTCATGAGTGGAAGTGATACTGCCAAGTATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTCGAGTCTCATACTGAATCATCTGATATGTGCTGCGAAAGTGATGCACCACAAAATGCAGAATTGAATAAACTTGCTAGTAATTTCCTACAGAATTCTGCTTCTACTTCAAACCCTATCCAATCTCGTGGATACATCGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAAGTGTCGAATGTGCTATATGCATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGCAGAGAATGCCTATTCAATTGTTGGGGTACCTCAATGGGTGGTAAGTGCCCAATCTGCCGTCAAATACTCAAGAAAAATGATCTTATTGTACTTCCATCGGAAAGCCCGTTCAAGGTTGATATTGAGAATAATTTGACGGAGTCCTCAAAGGTTTCTAAGCTCTTTGATTTCTTAGAAAATAGTCAGAAATATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAGTTGACTCAGAAGCAGAGAGAAAAAGTTCTGAAAGAATTTAACGAAACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTAGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCCTAATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGGGAACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCTCTCACTGATGATGAAGTTCGAACTTCCAGGATTCAAGACCTCAAAATGCTTTTCTCATGA 3462 0.4289 MENDNVVFRNGNPVLVAQPLTVVRARTSTGGGARVLATPPNQNPNSDESDACKASIIKVKDEPREFEDEAKSVTVAFQPPAAETVVECKTESDERRSMLAFDDFLKATNTKVASVDESLKSMEAESTIQMKVESSDVDVVFETQESVKSMEEVPNLNVVCDTQESVMAEPVKVEPVKVGPVKQPTLAEPVCAEKKTVCDDEVEVLKVVKGKEAVSDEVRVLKVVKKEVVEEKKIQIPNLEDGEFPVEPGWSLLGRKIEIATSTAKGVRRLVDNEIIYFDFPNPHTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCIATPYKLEMMQEIMLLVSFYVHHSVFSESVDTSWRLEACGNVNSAAYPLLTLLNMLEIEPYRKADFTPEEMKARKRVLKLDSDEVSVIPVNKRRKGVSEPLPATTEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTKIEKGGDDENAERNLHPCWSAYNICNGRSIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRLKSEDSDGESVYDNIFSAKRRNVDPSSNLEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTSNPDLLLDYDVVLTTYGVLSASYKSERENSIYHRVQWYRVVLDEAHHIKSHKSQVAEAAIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVQPWCSWQWWTKLVQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRAKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDTAKYADLSRLARKFLESHTESSDMCCESDAPQNAELNKLASNFLQNSASTSNPIQSRGYIDEVLGHIQKGESVECAICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQILKKNDLIVLPSESPFKVDIENNLTESSKVSKLFDFLENSQKYSDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNETKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1385 1153 MobiDBLite consensus disorder prediction 34 49 - -
Mtr1g1385 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 758 IPR027417 -
Mtr1g1385 1153 SMART ring_2 917 956 IPR001841 -
Mtr1g1385 1153 SMART helicmild6 1017 1100 IPR001650 -
Mtr1g1385 1153 CDD SF2_C_SNF 973 1111 - -
Mtr1g1385 1153 ProSiteProfiles Zinc finger RING-type profile. 917 957 IPR001841 -
Mtr1g1385 1153 SMART ultradead3 466 739 IPR014001 -
Mtr1g1385 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 987 1149 IPR001650 -
Mtr1g1385 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 1144 IPR027417 -
Mtr1g1385 1153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 907 964 IPR013083 -
Mtr1g1385 1153 Pfam Zinc finger, C3HC4 type (RING finger) 915 959 - -
Mtr1g1385 1153 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 415 1152 - -
Mtr1g1385 1153 Coils Coil 105 125 - -
Mtr1g1385 1153 ProSitePatterns Zinc finger RING-type signature. 932 941 IPR017907 -
Mtr1g1385 1153 CDD DEXDc_SHPRH-like 470 758 - -
Mtr1g1385 1153 Gene3D - 772 864 IPR027417 -
Mtr1g1385 1153 Pfam Helicase conserved C-terminal domain 987 1100 IPR001650 -
Mtr1g1385 1153 Pfam HIRAN domain 263 344 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mtr1g1385 1153 Gene3D - 522 770 IPR038718 -
Mtr1g1385 1153 MobiDBLite consensus disorder prediction 29 49 - -
Mtr1g1385 1153 Gene3D - 965 1152 IPR027417 -
Mtr1g1385 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 720 IPR014001 -
Mtr1g1385 1153 SUPERFAMILY RING/U-box 909 962 - -
Mtr1g1385 1153 Pfam SNF2-related domain 473 836 IPR000330 GO:0005524|GO:0140658
Mtr1g1385 1153 PANTHER DNA REPAIR PROTEIN RAD5B 415 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1385 Mtr-Chr1 16913092 16919531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1385 224 1152 RAD5 or RAD16-like Gene Family AT5G43530 60.554 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g1385 SNF2_N 1.4e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1385 K15505 - gmx:100806677 1456.43