Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1376 ATGGATTCTCTAGAGTTATTAGAAAACACCGATTATTTGGATTTTCTTGGCGATTATTCCCCTTTCATCGACCCATCTCCTCCCACCCATTTCCTTTGGTCCAATTCCAATCCAAGTGTGAGCACGGAATTTGACATTTCAAGTAACGTGGTTGCGTGTCAAGAGGAGAATACTAGGAAGAGTGTGAGCACGGAAACTGACATTCCAAGTGGTGCTGTTGTGTGTCAAGAAGAGAATACCAGGAAGAGGGGACGCACTGAATCTTGCTACAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGATTTTGTGATTTGAGTGCTGTTTTGGAACCCGGGAGACCTGTGAGAACAGATAAACCGGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAATCAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAGCTCCGTGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGAGAAGCAACTGAAAAGTATGCCTGTTTCACCAGCAGGGTTTATGCCTCCTCCTCCTATGGCTGCTTATCAAGCAAGTGTTAACAAAATGGCTGTTTATCCAAACTATGGATATATCCCAATGTGGCATTATCTTCCTCAATCAGCTCGCGATACGTCCCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAA 741 0.4238 MDSLELLENTDYLDFLGDYSPFIDPSPPTHFLWSNSNPSVSTEFDISSNVVACQEENTRKSVSTETDIPSGAVVCQEENTRKRGRTESCYKAGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKESNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKSMPVSPAGFMPPPPMAAYQASVNKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1376 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983
Mtr1g1376 246 SMART finulus 96 147 IPR011598 GO:0046983
Mtr1g1376 246 Coils Coil 131 186 - -
Mtr1g1376 246 PANTHER TRANSCRIPTION FACTOR BHLH104 4 246 - -
Mtr1g1376 246 PANTHER BHLH TRANSCRIPTION FACTOR 4 246 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Mtr1g1376 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 155 IPR036638 GO:0046983
Mtr1g1376 246 CDD bHLH_AtILR3_like 95 170 - -
Mtr1g1376 246 Pfam Helix-loop-helix DNA-binding domain 94 141 IPR011598 GO:0046983
Mtr1g1376 246 Gene3D - 81 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1376 Mtr-Chr1 16714040 16718193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1376 70 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.478 2.58e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g1376 HLH 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1376 - - mtr:MTR_1g043430 471.855