Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1375 ATGAATTTTGTTAACAAACAACATCACTTGATCATCTATCCTGTGTCACAAGCTCATCCACCTATCCAAAATCATCATGATTCTAGTACAAATTTTCCAATAGTAATCATTGTAGTAGGAATGATGGTAACATCTTTCTTGCTAATGGCATACTACACCTTTGTTATCAAATGCTGCTTCAATTGGAACAATATTGATCTTGATAGAGGAAGACGTTTTTCTTTTTCAAGACAACATGAAGAACAATCTACGTCATACTCGATGACATCGGATCATAGAGGATTAGAACAATCGGTGATTAATTCAATTCCGGTGATTCATTACAAACTAGAGAAAGATTATGGTGAATTAGGAATCTCTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAAGAAGATGAGAAACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATATTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGGAAAGTTTCAATGACAAGAGAAATCCAAGTTGAGCATGTTGTAACTCCAAGACCTTCACCTTATTTTGAAAGGCAAAATGTTGAAAACATCATTGATGGTTGTGAAGATTTTGTTTCAATTGATTTGGATAATATTGAAAATGGTCATGAAGGTCAAAACTTGCATGAAAGAATAGAAGAAAGAGGTAAAGAATTAGAGGTACCAAGAGATTCACACAAGAAAGCACTTAAGCTTCAAAAAGTGTCTAGCATGGGGAATGAGTGTATTAAAGACAAAGATGATGGCTTCTTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTAGCAATATATAAATCTTTATATCAACCTAATTTGCATGTTCACGAGGTTAGTTCCATTGAAGTTTGTGGTGATAGTAGTAATAGACCTAAGAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCAAGAAGTGTTGTTTGA 966 0.3364 MNFVNKQHHLIIYPVSQAHPPIQNHHDSSTNFPIVIIVVGMMVTSFLLMAYYTFVIKCCFNWNNIDLDRGRRFSFSRQHEEQSTSYSMTSDHRGLEQSVINSIPVIHYKLEKDYGELGISSECAFCLSEFQEDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRRKVSMTREIQVEHVVTPRPSPYFERQNVENIIDGCEDFVSIDLDNIENGHEGQNLHERIEERGKELEVPRDSHKKALKLQKVSSMGNECIKDKDDGFLVQPIRRSFSMDLAIYKSLYQPNLHVHEVSSIEVCGDSSNRPKRSFFSFGHGSRSRSVV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1375 321 SUPERFAMILY RING/U-box 99 173 - -
Mtr1g1375 321 SMART ring_2 123 164 IPR001841 -
Mtr1g1375 321 CDD RING-H2_PA-TM-RING 122 165 - -
Mtr1g1375 321 PANTHER RING-H2 FINGER PROTEIN ATL16 16 321 - -
Mtr1g1375 321 PANTHER RING-H2 FINGER PROTEIN ATL16 16 321 IPR044600 GO:0016567|GO:0016740
Mtr1g1375 321 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Mtr1g1375 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 171 IPR013083 -
Mtr1g1375 321 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1375 Mtr-Chr1 16700304 16701821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1375 28 282 C3H Transcription Factor Family AT1G04360 42.907 6.55e-61 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1375 - - mtr:MTR_1g043410 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2887 7 45675115 45676429 Mtr1g1375 1 16700304 16701821 PCT