Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1373 ATGGATTGTTCCTTCATACCCTTCTCATCAAAATCAAATTTTTTTCCACAATCTTCATTTGGGTCACAAGATTCAATCTCTTTGAATCCGAAAAACCACAACGAGTTTCTCCCTTTCAATGAAAACGACCCAGAAGAAATGCTTCTATATGGCATGATAACTTCATCACCACAAGAACAAACACTAAGCAAAACTAGCAACGAAAAAACAACAAAGAGCAACAAAGATAAGAATAATAAGTCTTATCGTGGCGTTCGACGTAGACCATGGGGGAAATTTGCAGCAGAAATAAGGGATTCAACTAGACATGGCATAAGGGTATGGTTAGGAACATTTGATAGTGCTGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTTCAGTTGAAAAGGTTAAGGAATCACTTAGGGACATGAATTATTTGTTGTCTAATGATAATGAGTGTTCACCTGTTATTGCTTTGAAGAGAAAACATTCAATGAAACGTAAAATGGATGAAAAGAAGAAGAAACATGACACAGATGTTAGGTTAGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATGTCTTCTTCTGATGATAATCAAAATATTTGGTGA 657 0.3546 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKSNKDKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFSVEKVKESLRDMNYLLSNDNECSPVIALKRKHSMKRKMDEKKKKHDTDVRLDNLVVFEDLGADYLEQLLMSSSDDNQNIW* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1373 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 209 - -
Mtr1g1373 218 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 PANTHER DNA-BINDING DOMAIN 28 209 IPR044808 GO:0003700|GO:0009873
Mtr1g1373 218 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Mtr1g1373 218 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Mtr1g1373 218 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Mtr1g1373 218 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1373 Mtr-Chr1 16657610 16658528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1373 5 218 AP2-EREBP Transcription Factor Family AT3G23240 59.091 8.55e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g1373 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1373 K14516 - pvy:116137607 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2892 7 45699069 45699891 Mtr1g1373 1 16657610 16658528 PCT