Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1366 ATGGTTAGGGCTCCTTGTTGTGAAAAGAAAGGATTGAAGAAAGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCATACATCAATAAACATGGACATAGCAATTGGCGTGCCCTACCAAAACATGCAGGTTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTATTTAAAACCTGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAGGAAACTATCATCAAGATGCATGAATCACTGGGGAACAGGTGGTCAGCCATAGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATGTATGGCACACTCACTTGAAGAAAAGATTATTGAATACCAATAATAACCAACCAAATTCAAATACCAAAAAAAGAGTGTCAAAACAAAAAATCAAAAGATCTGATTCCAATTCCAGCACTTTAACTACAGCATCAAATTGCACTTTTTCTAGTGATTTTTCATCACAAGAAAAAAATTTGGACAATAGCATCATTTGTGAAGACTCATTGGTGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAATTGATGATGAAATTAGTTCCACCATGCCATCAAATTCTATGACAGTTTCAAATGATTTACCAGATCAACAATGCATTTTTAATAATTCCGTGGAAAATTTTCAAAACCCTTTTGATAATGATGATGATGGCATGGATTTTTGGTATGATGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTTTAG 768 0.3424 MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFTNEEEETIIKMHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQPNSNTKKRVSKQKIKRSDSNSSTLTTASNCTFSSDFSSQEKNLDNSIICEDSLVTMPEIDESFWSETVIDDEISSTMPSNSMTVSNDLPDQQCIFNNSVENFQNPFDNDDDGMDFWYDVFIKSGESTELPEF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1366 255 CDD SANT 69 112 IPR001005 -
Mtr1g1366 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr1g1366 255 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 248 - -
Mtr1g1366 255 CDD SANT 16 61 IPR001005 -
Mtr1g1366 255 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr1g1366 255 Gene3D - 68 144 - -
Mtr1g1366 255 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr1g1366 255 SMART sant 66 114 IPR001005 -
Mtr1g1366 255 SMART sant 13 63 IPR001005 -
Mtr1g1366 255 MobiDBLite consensus disorder prediction 115 148 - -
Mtr1g1366 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Mtr1g1366 255 Gene3D - 13 66 - -
Mtr1g1366 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr1g1366 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr1g1366 255 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr1g1366 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr1g1366 255 MobiDBLite consensus disorder prediction 115 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1366 Mtr-Chr1 16543301 16545310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1366 1 255 MYB Transcription Factor Family AT2G31180 52.490 3.98e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g1366 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1366 K09422 - gmx:100794205 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2900 7 45783952 45786850 Mtr1g1366 1 16543301 16545310 PCT