Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1365 ATGGTTAGAGCTCCATGTTGTGAAAAGAAAGGATTGAAGAAAGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCCTACATCAACAAACATGGACATAGCAATTGGCGTGCTCTCCCAAAAGATGCCGGTTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAATTATTTAAGAACTGATATTAAGAGAGGAAATTTTTCAAATGAAGAAGAGCAAATTATCATTAAGATGCATGAGTTGCTAGGGAACAGGTGGTCAGCAATAGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATATGTGGCACACTCATTTGAAGAAAAGACTATTGAATACCAAAAATAACCAACCTCATTCAAATGCCAATTCCAACTCAATGGAAACTACATCATCAAATTGCACTTTTTCTAGTGATTTTTCATCACAAGGAAAAAATTTGGACAATAGCATCATTTGTGAAGACCCTGAAGACTCATTTGTGACAATGCCTCAAATTGATGAAAGCTTTTGGTCAGAGACAATAACTGATGATGAAACTAATTCTATGACTATTTCACATGAATTACCAATTCAAGAATACCCTTATAATAATTCATTGGAAAATTTCCAAAACCCTTTTGATGATGATGATGGAATGGGTTTTTGGGTTGACTTGTTGATTAGATCAGAGGAATCAACAGAATTGCCAGAGTTCTAA 717 0.3473 MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKDAGLLRCGKSCRLRWINYLRTDIKRGNFSNEEEQIIIKMHELLGNRWSAIAAKLPGRTDNEIKNMWHTHLKKRLLNTKNNQPHSNANSNSMETTSSNCTFSSDFSSQGKNLDNSIICEDPEDSFVTMPQIDESFWSETITDDETNSMTISHELPIQEYPYNNSLENFQNPFDDDDGMGFWVDLLIRSEESTELPEF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1365 238 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr1g1365 238 CDD SANT 69 112 IPR001005 -
Mtr1g1365 238 CDD SANT 16 61 IPR001005 -
Mtr1g1365 238 Gene3D - 13 66 - -
Mtr1g1365 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr1g1365 238 MobiDBLite consensus disorder prediction 118 141 - -
Mtr1g1365 238 SMART sant 13 63 IPR001005 -
Mtr1g1365 238 SMART sant 66 114 IPR001005 -
Mtr1g1365 238 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr1g1365 238 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr1g1365 238 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 230 - -
Mtr1g1365 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Mtr1g1365 238 MobiDBLite consensus disorder prediction 119 141 - -
Mtr1g1365 238 Gene3D - 68 140 - -
Mtr1g1365 238 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr1g1365 238 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr1g1365 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1365 Mtr-Chr1 16532412 16534228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1365 1 238 MYB Transcription Factor Family AT2G31180 51.383 1.85e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g1365 Myb_DNA-binding 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1365 K09422 - gmx:100794205 310.842