Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1361 ATGGCAATGAACTCTGTTAAGGAAAAATCAGCTGAGACAAATGATATGGAAAACATATGCAAGTGGCATGAAATTCTGAGGAAGAACAAATCTGAGAAGTCGAAGGAAGAACACCAAGATCATGAAACGCATTTTTTGGATGATCCTAATGCCAAAGTCAAGGTTCCTCCACATGTAGTTGAGAATCCTTCAAGCAATGTGAAAGTGGAGGTTCCACCTCCAATTGTTGCACCTCTAGTTATTGCAACTCCATTTGAAAATCCTTCCGGCAATGTTAAATCCGAGGTTCCTTATGTCGATACCAACGTCGAGGTGGCACCACCAGTTGCTGTATTTAGAAGATATTTGCGACCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAAGGCGAACGATCACTTGATCTGATCTGCAAGGATACAGCTGAGGTTGAGGTATGGCTTTCGGGCCTTAAGGCATTAATTTCTACTGGACAGCTTAGAAATCGACGAACTAGAAGTGAATTAACAGATGACAGTAATGACATTTCTCCAAATGATCGTCCTTTTGGTGGAGCACTAGAGTTTACTGCAAGTATTCCCAAGGGAAGGTTTTCTTTTGAAGCAGTTCCTCGTGAATCCACATCGAATAGAAGATCTGATGCGGGGTCAGAGCATACAAGTATGGCGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTTAGTGTATCAAGTACTAACTATGCTAGTAGTGTAGTATCAGGACCAGATGACATAGAGTCTCTTGGTGATGTTTTTATATGGGGAGAGGTTTGGGCTGAAGGCAATTCCTCCGATGGATTAGGGAGTCAAGTCCCTTCCAAGATAGACATGTTGATTCCCAAGCCATTGGAATCTGATGTTGTTCTTGATGTTAATTATATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACAAGGCAAGGTGAGATTTTTACCTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGGTTTGATAAAGATTATGGTAAACCCCGTCTTGTTGATTCCCTAGCCATTACTAGTGTGAGTTTTGTTGCTTGTGGTGAATATCATACATGTGCAGTATCTATATCCGGGGATCTATACACCTGGGGTGATGGTACACATAACGCGGGAATTCTAGGTCATGGAACTGATGTTAGCCACTCCATACCAAAGAGGGTCACTGGCCCTTTAGAAGGACATCAGGTTGTATCTATAGCATGTGGTGCATGGCATACGGCATTGATAACTTCCAATGGGAAACTTTTTACCTTTGGCGATGGAACGCTTGGTGTCTTGGGGCATGGAGACAGAGAGAGTGTGGCATATCCAAAGGAGTTACAGTTATTGAGTGGACATAAAGCTGTTAAGGTTGCATGTGGAGTGTGGCACACAGCAGCAATTATAGAGGTTAATGATCAATCTGGTTCAAGTTCAAATACTTCTTCGTCAAAGAAACTATTCACGTGGGGTGATGGAGACCAATATCGTTTAGGTCATGCTAACAAGGAAACTTACCTTCAACCAACTTGTGTGGCTGCACTTGCTGATTATAATTTTCTACAGGTTGCATGTGGACATAGTTTGACCGTTGCGCTAACCGCATCCGGTCATGTTTTTACTATGGGGAGCAAGGCGTATGGTCAACTAGGAAATCCAACCTCCGATGGAAAAGTGCCGATTCTAGTAAGAGATAAATTACAAGGAGAAACTGTTGAGGAAATATCGTGCGGCACACATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGGCATGGAGACATAGAAGATCAGAAAACTCCAATATTGGTGGAAGCTTTGAAAGAAAGGCATGTAAAAAATATCGCATGTGGCGCAAATTTTACAACTTGTATATGCATACATAAGTGGGTTTCAGGGAATGATCAATCGGTTTGCTCCGGTTGTAGACAGCCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCGCTGAAAGCAGCATTGGCTCCAACGCCTAGCAAACCGCATCGTGTTTGTGATGCTTGTTATGCTAAACTTAAAGGTTGCGAGAATAGTAATGCTTCCCATTTCAATAAAGAAATTACCCGTCCTTCTAGTTCCGTGTATGGAAGGGAAAAAACTGAGAGGGTTGAGGTAAGACCTTCAAAATTTCTCCTGTCTTCTGCCACATGTCTAGTGAAATCCCTTGGAAGTACACATGAATCATCTTCCATGGCCGGAGACGCGTTACAATTGAAAGATATCATATTTCCTGGTCCATCAAGTGCAACGCAGAAAGCTTCCAGGGCTCTTATTATGCAGCAAAGCCAGGCTCCAACTCCACCTCCATCAGCTAATTCAAGACCAGCCTCGCCATATTCTAGAAGACCGCCTAGCCCGACACGGTCTGTCTCCCCTGGATTTTCAAGAAGTCTTATTGATAGTTTAAAGAAGAAAAATGAGCACCTGAATCAAGAAGTTTCAAAGTTGCAGAACCACATTCGAAGTTTAAAGCAAAAGGGTGACATGCAAGATATAAAGATTCGGGAGCTTCAAAAAAATATCGAGGAAGCCAATCTATTGGCTGGAGAGGAATCTTCTAAGCATAGAGAAGCAAAGGAATTCATCAAGTCTATAACAGAAGAGTTGAGCGAAGTGACTGAAAAGTTGCCACCAGAGATTCCCGGCAGTGAAACCTTGAAAGTGATCCATGCTCAAGCTCAAAATCTTCTCAAAGAAAATTTAGAATTTGAATCTTCCTTCCAACCGAGTTTCGAGTCTGAGCAACAACGTGCGCCTGATATACCAGCATCAGATGGTGACTCTTCAAACCTGCAAGAGCAAAGACTGGAAGGAAACAATGAAGTTTCTGAGGTTGTTCGATCAACAAATGGAGCAGATGATCGTCAAGAAAGCAGTAGCAGCTCGTATTTATCAACTAATGCAGTCTCTCCACCAAACTCGGAAAATAGTATCAGATCACAGGAGTCGTCCAGGCCTGTGAGAGAAGGAGAAACATCGGTCATTGAACAATTTGAACGCGGTGTTTATATCACAGCCATAGTAATAGCTGATGGCAGCAAAATTTTCAAACGTGTTAGATTCAGTAGGAGAAGATTCAGTGAGCAACAAGCAGAAGAATGGTGGAGCAATAACAAAGATAGGGTGTATAGAAGATATAACCCACCACCTATAAATAATGAAAGTATTGATTCATCTAGCACCCCACCTCATGGCGAAAAAAATGTTGAAGCAGCCTCAATCAACCAAGTGTAG 3351 0.4217 MAMNSVKEKSAETNDMENICKWHEILRKNKSEKSKEEHQDHETHFLDDPNAKVKVPPHVVENPSSNVKVEVPPPIVAPLVIATPFENPSGNVKSEVPYVDTNVEVAPPVAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEVWLSGLKALISTGQLRNRRTRSELTDDSNDISPNDRPFGGALEFTASIPKGRFSFEAVPRESTSNRRSDAGSEHTSMAPVRTSVGDGSRVSVSSTNYASSVVSGPDDIESLGDVFIWGEVWAEGNSSDGLGSQVPSKIDMLIPKPLESDVVLDVNYIEPGVSHIALVTRQGEIFTWGEDSGGRLGHGFDKDYGKPRLVDSLAITSVSFVACGEYHTCAVSISGDLYTWGDGTHNAGILGHGTDVSHSIPKRVTGPLEGHQVVSIACGAWHTALITSNGKLFTFGDGTLGVLGHGDRESVAYPKELQLLSGHKAVKVACGVWHTAAIIEVNDQSGSSSNTSSSKKLFTWGDGDQYRLGHANKETYLQPTCVAALADYNFLQVACGHSLTVALTASGHVFTMGSKAYGQLGNPTSDGKVPILVRDKLQGETVEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPILVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGCENSNASHFNKEITRPSSSVYGREKTERVEVRPSKFLLSSATCLVKSLGSTHESSSMAGDALQLKDIIFPGPSSATQKASRALIMQQSQAPTPPPSANSRPASPYSRRPPSPTRSVSPGFSRSLIDSLKKKNEHLNQEVSKLQNHIRSLKQKGDMQDIKIRELQKNIEEANLLAGEESSKHREAKEFIKSITEELSEVTEKLPPEIPGSETLKVIHAQAQNLLKENLEFESSFQPSFESEQQRAPDIPASDGDSSNLQEQRLEGNNEVSEVVRSTNGADDRQESSSSSYLSTNAVSPPNSENSIRSQESSRPVREGETSVIEQFERGVYITAIVIADGSKIFKRVRFSRRRFSEQQAEEWWSNNKDRVYRRYNPPPINNESIDSSSTPPHGEKNVEAASINQV* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 369 421 IPR000408 -
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 424 473 IPR000408 -
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 595 642 IPR000408 -
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 541 590 IPR000408 -
Mtr1g1361 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 492 538 IPR000408 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 30 52 - -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Mtr1g1361 1116 Gene3D - 485 658 IPR009091 -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 542 593 IPR000408 -
Mtr1g1361 1116 SUPERFAMILY RCC1/BLIP-II 259 647 IPR009091 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 791 834 - -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 1090 1116 - -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 541 IPR000408 -
Mtr1g1361 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 30 51 - -
Mtr1g1361 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1031 1085 IPR013591 -
Mtr1g1361 1116 ProSiteProfiles BRX domain profile. 1031 1086 IPR013591 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 944 1029 - -
Mtr1g1361 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Mtr1g1361 1116 Gene3D - 102 166 IPR011993 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 944 1031 - -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 205 236 - -
Mtr1g1361 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 411 421 IPR000408 -
Mtr1g1361 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 216 236 - -
Mtr1g1361 1116 Pfam Transcription factor BRX N-terminal domain 889 919 IPR027988 -
Mtr1g1361 1116 SUPERFAMILY FYVE/PHD zinc finger 646 721 IPR011011 -
Mtr1g1361 1116 CDD FYVE_like_SF 656 708 - -
Mtr1g1361 1116 Coils Coil 838 865 - -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 1087 1116 - -
Mtr1g1361 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 109 1094 - -
Mtr1g1361 1116 Gene3D - 207 381 IPR009091 -
Mtr1g1361 1116 Gene3D - 382 484 IPR009091 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 531 549 IPR000408 -
Mtr1g1361 1116 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Mtr1g1361 1116 SMART fyve_4 644 713 IPR000306 GO:0046872
Mtr1g1361 1116 SUPERFAMILY PH domain-like 103 157 - -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 807 821 - -
Mtr1g1361 1116 Pfam FYVE zinc finger 646 711 IPR000306 GO:0046872
Mtr1g1361 1116 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 109 1094 - -
Mtr1g1361 1116 MobiDBLite consensus disorder prediction 791 806 - -
Mtr1g1361 1116 Coils Coil 873 893 - -
Mtr1g1361 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 713 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1361 Mtr-Chr1 16413405 16424336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1361 1028 1097 Major Intrinsic Protein MIP AT1G31880 34.286 7.57e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1361 - - gmx:100778984 1338.55