Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1347 ATGATGGATATTGTTATTGGTGGAAAGTTCAAGCTTGGAAGGAAACTTGGGAGTGGAGCATTTGGGGAGCTTTATATGGGTGTTGATGTGAAAACTCAAGAGGAAGTGGCTCTTAAGCTGGAACATGTGAAGACAAAGTATCCTCAGCTTCTGTATGAGTCTAAATTGTACAGGCTTCTGCAAGGAGGAACCGGCATACCTCATATAAAATGGTATGGAGTCGAGGGTGACTGCAACGTGATGGCTGTTGACCTTCTTGGACCAAGTCTTGAAGACTTATTTAATTACAGCAATAGAAAATTCTCCTTAAAAACAGTATTGATGCTTGCCGATCAACTAATAAATAGAGTAGCGTATATGCACTATCGTGGATTTCTGCATCGTGATGTAAAGCCCGAAAACTTTCTGATGGGTTCAGGCAGCAAGATAAATCAGGTGTACATTATTGACTATGGACTTGCAAAAAAATATTGTGATCTTAAAACACAAAGGCACATACCATACAGGGAAAACAAGAGTCTCATTGGAACTGCTCAATATGCAAGTTTTAACACTCACCTTGGAAATGAACAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTTCTAATGTACTTTTTGAGAGGAAGTCTTCCATGGTATGGGCACGGCATGAAAGCTGTCACCAAAGAGAAGAAATATGAATGGATAAGGGAAAAAAAGAAGCTAACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAGTTCGCGTCATATTTCCACTATTGTCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAAACTCTTTCGGGAACTATTCATTAGTGAAGGTTATCAGTATGACTTCGTATTTGATTGGACTACATTGAAGGATCCACAAAGTGGTTCCATTTCTAAAACAAGTCCAAATGTGAAACCAGTCTTAAATACAGGACCATATGAAGAGAGATTAGAACGGCCTACAGTCGGAGAAGAGATTCGTGATAGAATATCAGGTGAAGTTGGGGCATTTTCAGGAAGAAATAATGGCTCTGGGGACAGACTGCAGCATAGGTCTTTGGCAGATCCGTCGTATGCACCTTCAGATGTTCTTCCATGA 1119 0.3995 MMDIVIGGKFKLGRKLGSGAFGELYMGVDVKTQEEVALKLEHVKTKYPQLLYESKLYRLLQGGTGIPHIKWYGVEGDCNVMAVDLLGPSLEDLFNYSNRKFSLKTVLMLADQLINRVAYMHYRGFLHRDVKPENFLMGSGSKINQVYIIDYGLAKKYCDLKTQRHIPYRENKSLIGTAQYASFNTHLGNEQSRRDDLESLGYVLMYFLRGSLPWYGHGMKAVTKEKKYEWIREKKKLTPIEVLCKSHPTEFASYFHYCRSLRFEDKPDYSYLKKLFRELFISEGYQYDFVFDWTTLKDPQSGSISKTSPNVKPVLNTGPYEERLERPTVGEEIRDRISGEVGAFSGRNNGSGDRLQHRSLADPSYAPSDVLP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1347 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Mtr1g1347 372 ProSiteProfiles Protein kinase domain profile. 10 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1347 372 Pfam Protein kinase domain 11 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1347 372 SUPERFAMILY Protein kinase-like (PK-like) 5 293 IPR011009 -
Mtr1g1347 372 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Mtr1g1347 372 MobiDBLite consensus disorder prediction 340 372 - -
Mtr1g1347 372 PANTHER CASEIN KINASE-RELATED 2 313 - -
Mtr1g1347 372 PANTHER CASEIN KINASE 1-LIKE PROTEIN 10 2 313 - -
Mtr1g1347 372 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Mtr1g1347 372 SMART serkin_6 10 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1347 Mtr-Chr1 16242358 16246099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1347 9 225 EF-hand Containing Proteins AT2G17890 26.339 1.45e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mtr1g1347 Pkinase 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1347 K08960 - jre:108981384 561.222