Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1344 ATGATGGATCTTGTTATTGGTGGAAAATTCAAACTTGGGAGGAAAATTGGAAGTGGGTCATTTGGAGAAATTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTGTACGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACTGGAATACCGCATATAAAGTGGTCTGGAGTTGAGGGTGAGTACAATGTCATGGCCATTGACCTTCTTGGACCCAGTCTCGAAGACTTATTTAACTACTGTAGTAGAAAATTCTCTCTTAAGACAGTGTTGATGCTTGCTGATCAACTAATAAACAGAGTAGAGTATATGCACTCTCGGGGTTTTCTGCATCGTGATATAAAGCCCGACAATTTTCTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGAATGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAAATGCTTACTCCAATAGAGGTATTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGACTCTTCCGGGACCTATTCATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACACGGCCAAGTGTGAAACCAGTCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGACGTGCAACCTGATTCTGATAGGGCTCGAAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCAAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCAAAATCATCCTTCACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGTTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGGAAATGA 1377 0.4219 MMDLVIGGKFKLGRKIGSGSFGEIYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGEYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPVLNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSAQGLQHRSLDNMPSSKDVQPDSDRARSSTRNGSASKRPMISSSRPSSSGEPSESRSSRLISSSSRLSTTQRVQPGLESKSSFTRTAGTRGGRDDTLKSFELLSIGTGKRK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1344 458 PANTHER CASEIN KINASE-RELATED 2 445 - -
Mtr1g1344 458 MobiDBLite consensus disorder prediction 373 436 - -
Mtr1g1344 458 Pfam Protein kinase domain 11 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1344 458 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1344 458 CDD STKc_CK1_delta_epsilon 9 283 - -
Mtr1g1344 458 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Mtr1g1344 458 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 445 - -
Mtr1g1344 458 SMART serkin_6 10 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1344 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Mtr1g1344 458 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Mtr1g1344 458 MobiDBLite consensus disorder prediction 301 445 - -
Mtr1g1344 458 MobiDBLite consensus disorder prediction 346 364 - -
Mtr1g1344 458 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1344 Mtr-Chr1 16142319 16148402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1344 9 214 MAP Kinase Kinase Kinase AT3G06030 26.389 1.39e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mtr1g1344 Pkinase 4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1344 K08960 - jre:108991207 778.089