Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1323 ATGCATATTTTGATAGTGATGGGAAAAACAAGCAAATGGCTTAGGAATCTTTTGAAAGGGAAGAAAGACAAAGAAAAAGAGAAAGAAAATTGTGGAAATGGAACTGAAAATCCTACTACTCCAATCTCAACAACACCAAAGGAGAAAAGAAGATGGAGTTTCAGAAGATCATCAGCTTCCAAGGAGATGAATGTTGCAGAATCAAGTGTCACTTCTTCAGTGACATTACAAAGTGTTGCTATAGATTCTCAGAATTATGAGAGGAAGCATGTCTTGGATGTTGCTGCTGCTGATGGTGTAATCTTCTTGAATTCTTGTTCCAATGGAGGAACTAGAAGGAGTATTCAAGAGGCTTCTGCCATTAAAATTCAATCTGTCTTTAGATCCTACTTGGCAAGAAAGGCATTATGTGCTCTTAGAGGAATAGTGAAGCTGCAAGCACTAGTAAGAGGTCACTTGGTGAGAAAACAAGCAACAGAGACACTAAGATGCATGCAAGCTTTGGTCATAGCACAAGCAAGAGCTTGTGCTCAAAGGGCTAGAATGTTGTCAGAAGAAAAGACTAATCAAAAGCATTCTCCCTACAGAAAAACCAGAGAGGACAATTTATTCATGCATGTGTATAATGAAATGGACAGAGGCTTTGAAGAGAATATAAAGACAGTGGAGATGGATGTATGTGAATCCAAAGGTAACACAAGAGGCAGAAACAACACTGCAAATCATGAACATCATGAATTGTCTGAACACAGATTTTCTGCATATTACTCGCCAATTGGTTCATACTCGAAGAAAGAATCACCAACACCATCAGCACTAACAGATTCAAGCCCAAGAGCATGCAGTGGACATTTTGAGGATTGTTCCCTCAGTACAGCACAGAACAGTCCCTATTACTACTCAGCTGTTTCAAGAGTAGATAATTCAAAGCTTCCTTTTGCTTTCACTAGACAATCCTATGAAGAATCCATTCCCAATGACTATCCATTATTTCCAAATTACATGGCTAACACAGAATCATCAAGAGCTAAAGTCAGATCACAAAGTGCACCGAAGCAAAGGCCGGACATGTACGAGAGACAACCGAGTCGGCGAAGAGCTTCTGTGGAAGGAAGAAATGTTCCAAGGCCAGTGAGGATGATGAGGTCATCTTCACAGGTTGGTGTCACTGCACAAAACTACCAATATCCATGGTCAATAAAGCTTGATAGGTCCTTAGTTTCACTCAATGAGAGTGAGGGTGGTGGCTCCACAAGTACAGTACTAACAAACTCTAACTACTGCAAATCTCTTGTTTCATATAGTCCTCATGGACCAAGGTATTGA 1326 0.402 MHILIVMGKTSKWLRNLLKGKKDKEKEKENCGNGTENPTTPISTTPKEKRRWSFRRSSASKEMNVAESSVTSSVTLQSVAIDSQNYERKHVLDVAAADGVIFLNSCSNGGTRRSIQEASAIKIQSVFRSYLARKALCALRGIVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMLSEEKTNQKHSPYRKTREDNLFMHVYNEMDRGFEENIKTVEMDVCESKGNTRGRNNTANHEHHELSEHRFSAYYSPIGSYSKKESPTPSALTDSSPRACSGHFEDCSLSTAQNSPYYYSAVSRVDNSKLPFAFTRQSYEESIPNDYPLFPNYMANTESSRAKVRSQSAPKQRPDMYERQPSRRRASVEGRNVPRPVRMMRSSSQVGVTAQNYQYPWSIKLDRSLVSLNESEGGGSTSTVLTNSNYCKSLVSYSPHGPRY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1323 441 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Mtr1g1323 441 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Mtr1g1323 441 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Mtr1g1323 441 PANTHER IQ-DOMAIN 5-RELATED 7 417 - -
Mtr1g1323 441 MobiDBLite consensus disorder prediction 33 47 - -
Mtr1g1323 441 MobiDBLite consensus disorder prediction 21 51 - -
Mtr1g1323 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 7 417 - -
Mtr1g1323 441 MobiDBLite consensus disorder prediction 339 386 - -
Mtr1g1323 441 MobiDBLite consensus disorder prediction 357 372 - -
Mtr1g1323 441 SMART iq_5 115 137 IPR000048 GO:0005515
Mtr1g1323 441 SMART iq_5 138 159 IPR000048 GO:0005515
Mtr1g1323 441 Pfam Protein of unknown function (DUF4005) 293 372 IPR025064 -
Mtr1g1323 441 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Mtr1g1323 441 Gene3D - 114 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1323 Mtr-Chr1 15864440 15867747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1323 5 436 IQD Protein Family AT4G14750 47.277 8.85e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1323 - - pvu:PHAVU_007G277500g 531.946