Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1316 ATGCCTTTGAGGCAAATGAAAGAGAGTTCAGAACAACACCTTGTGATCAAACCTCATCAGCAAAACTCTATGAGTCAAGCTAAGAAAGTTACTAAAGCTGTTCAGAATGGTAAAGGTCCACCATTAGTGTCACAAGAACAACAGAACCAAACTTCACCACCTCAAGTAAAGAGTGGTGGAAGAAGAAGGAGTAGAAATGGTAGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGGCCTTGTACTGTTGTGAAGAGCAATGAAAATGGCCATGTTGTTGAAAATGGAAACACAGTCTCTAGTGATGTAGAAATGAGTTTTCCTACTTCAAGTAAATCTTTGAGTTTTGCTCAAAGACCAGGTTATGGACAAGCTGGTACAAAATGCATTGTTAAAGCCAACCACTTCTTTGCAGAATTACCAGACAAGGACTTGAACCAATATGATGTAACTATTACACCGGAAGTGTCTTCGAAAGCCGTAAACAGGTCTATCATAGCAGAACTTGTGAGGCTGTATAAAGAATCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGGAAAAGTCTTTACACAGCAGGAGTTCTTCCCTTTTCTTGGAGAGAGTTTAAGATTAAGCTTATCGAAGAAGAGGATGGAATTAATGGCCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGACAATTTCTAGCCGGAAAGCGTGCTGATGCTCCACAGGAAGCAATACAAATTCTAGACATTGTACTAAGAGAGCTAGCGTCAAAGAGGTTTTGTCCTATCGGGAGGTCATTTTATTCACCTGATATTAGAGCACCACAACGACTCGGAGAAGGATTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCACTCAATATCGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCGGTGGTAGAGTTTGTTGGCCAGCTATTAGGAAAAGATGTGCTGTCAAGGCAGTTGTCTGACGCGGACCGCATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCCGGCATAACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCGACTATGAAATCAGTGGTTGAATACTTCCAAGAAATGTATGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAGAAGAAAGCAAACTATTTACCAATGGAGGCCTGTAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACTTCTCTCTTGAAAGTCACATGCCAGAGACCTCGTGATCGAGAAAATGACATTTTACGGACAGTTCAGCATAACGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAGTCAGCGAGAAGTTAGCTTCGGTGGAAGCACGAATTCTGCCCGCTCCTTGGCTTAAATATCACGAGAGTGGTAAAGAAAAAAATTGTTTACCCCAAGTTGGCCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGCTGGGCGTGCATAAATTTTTCACGAGGTGTGCAAGATAGTGTTGCTCGTACTTTTTGTAACGAGCTTGCACAAATGTGTCAAGTCTCTGGCATGGAATTTAATCTGGAGCCTGTTATCCCGATCTACAATGCGAAACCCGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCGTCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTGATATTACCCGACAACAATGGCTCTCTCTATGGTGATCTCAAGCGCATTTGTGAGACTGACCTTGGCTTAATTTCTCAATGTTGTCTAACAAAGCATGTCTTTAAGATCACTAAGCAATACTTGGCCAATGTGTCTCTGAAGATCAACGTTAAGATGGGGGGTAGAAACACCGTTCTTGTTGATGCCGTAAGCTGCAGAATACCATTGGTTAGTGACATACCGACAATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGATTCCAGCCCCTCAATAGCAGCTGTTGTAGCATCCCAAGATTGGCCTGAAGTTACAAAGTACGCAGGTTTAGTTTGTGCTCAACCTCAAAGACAAGAGCTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATACGGGATTTGTTGGTTTCGTTTAGAAGGGCAACAGGACAGAAGCCACAAAGGATTATATTCTATAGGGATGGTGTTAGTGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCTATTCGGAAGGCATGTGCTTCTTTGGAGCCAAACTATCAACCTCCAGTAACTTTCATAGTTGTGCAAAAAAGACACCATACTCGGTTATTCGCAAACAACCACAGGGACAGAAACAGTACTGATCGGAGTGGAAATATACTGCCTGGAACTGTTGTTGATACCAAAATTTGTCATCCAACAGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGCCGTCCAGCGCATTATCATGTTCTATGGGATGAAAACAACTTCACAGCGGATGGAATTCAGTCTTTGACAAACAATCTCTGTTACACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCCTATTATGCACATCTAGCAGCATTTCGAGCACGTTTCTACACGGAGCCAGACCTTCAGGAGACTGGTTCCACAGGTGGTCGTGGTTCCAAGACAACACGTGCAGCCGGAGATTGCGGTGTCAAGCCATTGCCAGCACTGAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAA 2940 0.4238 MPLRQMKESSEQHLVIKPHQQNSMSQAKKVTKAVQNGKGPPLVSQEQQNQTSPPQVKSGGRRRSRNGRKSDQVDVLMRPSCRPCTVVKSNENGHVVENGNTVSSDVEMSFPTSSKSLSFAQRPGYGQAGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRAPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1316 979 MobiDBLite consensus disorder prediction 1 72 - -
Mtr1g1316 979 SMART PAZ_2_a_3 331 464 IPR003100 GO:0005515
Mtr1g1316 979 SUPERFAMILY Ribonuclease H-like 608 937 IPR012337 -
Mtr1g1316 979 CDD PAZ_argonaute_like 326 441 - -
Mtr1g1316 979 SMART DUF1785_2 274 326 IPR014811 -
Mtr1g1316 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 978 - -
Mtr1g1316 979 ProSiteProfiles PAZ domain profile. 327 442 IPR003100 GO:0005515
Mtr1g1316 979 CDD Piwi_ago-like 486 936 IPR045246 -
Mtr1g1316 979 ProSiteProfiles Piwi domain profile. 616 937 IPR003165 GO:0003676
Mtr1g1316 979 Pfam Mid domain of argonaute 525 602 IPR032473 -
Mtr1g1316 979 Gene3D paz domain 320 446 - -
Mtr1g1316 979 Pfam N-terminal domain of argonaute 131 265 IPR032474 -
Mtr1g1316 979 SMART Piwi_a_2 616 937 IPR003165 GO:0003676
Mtr1g1316 979 SUPERFAMILY PAZ domain 321 482 IPR036085 GO:0005515
Mtr1g1316 979 Pfam PAZ domain 350 458 IPR003100 GO:0005515
Mtr1g1316 979 Gene3D - 506 679 - -
Mtr1g1316 979 Pfam Argonaute linker 1 domain 275 324 IPR014811 -
Mtr1g1316 979 PANTHER PROTEIN ARGONAUTE 10 58 978 - -
Mtr1g1316 979 Pfam Piwi domain 617 935 IPR003165 GO:0003676
Mtr1g1316 979 Gene3D - 685 979 IPR036397 GO:0003676
Mtr1g1316 979 Pfam Argonaute linker 2 domain 468 514 IPR032472 -
Mtr1g1316 979 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1316 Mtr-Chr1 15764576 15773241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1316 1 979 Eukaryotic Initiation Factors Gene Family AT5G43810 81.526 0.0 1650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1316 K11593 - gmx:100816999 1770.75