Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1300 ATGGAACGGCGGCCACAATCACCACCGTCGCCGCCACCATCACCGCCGTCACGAATCATCCTCGGCAAATACCAACTCACAAAATTCCTCGGCCGAGGAAACTTCGCTAAAGTATACCAAGCACGTTCCCTCATCGACGGTTCAACCGTCGCCGTAAAAGTCATCGACAAATCCAAAACCGTCGATGCATCAATGGAGCCACGAATCGTTCGCGAAATTGACGCGATGCGTCGGCTTCAAAATCATCCAAACATTCTCAAAATCCATGAAGTTTTAGCCACTAAAACTAAGATCTACCTCATCGTTGATTTCGCCGGCGGCGGTGAACTTTTCCTCAAACTCGCCCGACGTCGTAAGTTCCCGGAGGCACTAGCACGGAGGTACTTTCAACAGCTTGTTTCCGCTCTTTGTTTCTGCCACCGTAACGGTATCGCTCACCGCGATCTCAAACCGCAGAATCTCCTCCTCGATGCTGAAGGTAATCTCAAGGTTTCCGATTTCGGTCTCTCGGCGTTGCCGGAGCAGCTCAAAAACGGTCTTCTGCATACAGCTTGTGGTACGCCGGCGTACACCGCGCCGGAGATTCTCGGCCGGATTGGATACGACGGATCTAAAGCTGATGCCTGGTCTTGTGGTGTTATCCTCTACGTTCTTCTCGCCGGTCATCTTCCGTTCGATGATTCGAATATTCCGGCGATGTGTAAGAGAATAACTCGCCGGGATTATCAGTTTCCGGAATGGATTTCGAAACCGGCGCGGTACCTAATCTATCAATTACTTGATCCGAATCCGAAAACCCGTATCCGGTTAGAGAATGTTTTTGGAAACAATTGGTTTAAGAAATCGTTAAGAGAAGAACCTGAAGAGAAACTTTTCGATGACAAATACAGTTTTGATGGTTACAAGAAACTGGAATTAGGGATGAATGCGTTTGATATAATATCGTTGTCGTCGGGTTTGAATTTGAGTGGTTTGTTTGAAACGACGACGTTAAGGAGTGAGAAGAGGTTTACTTCAAGTGAAGAAGTTGGTGTGGTTGAGGAGAAGGTGAAGGAGATTGGAGTGAGATTAGGGTTTCGGGTTGAGATTGGGAAGAATGGTGCAATTGGATTGGGGAAAGGGAAGGTTACTATGGTTGTTGAGGTGTTTAAGATTGTTGATGATTTGTTGTTGGTTGCTCTTAAATTGGAGAATGGTGGATTGGAGTTTGAGGATGTTCATTGGAATGATTGGAAAATTGGGCTTCAAGATGTTGTTCTTTCTTGGCATAATAATCATGAATCCAACAACTTGCCCATGTAA 1302 0.4631 MERRPQSPPSPPPSPPSRIILGKYQLTKFLGRGNFAKVYQARSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLIVDFAGGGELFLKLARRRKFPEALARRYFQQLVSALCFCHRNGIAHRDLKPQNLLLDAEGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKRITRRDYQFPEWISKPARYLIYQLLDPNPKTRIRLENVFGNNWFKKSLREEPEEKLFDDKYSFDGYKKLELGMNAFDIISLSSGLNLSGLFETTTLRSEKRFTSSEEVGVVEEKVKEIGVRLGFRVEIGKNGAIGLGKGKVTMVVEVFKIVDDLLLVALKLENGGLEFEDVHWNDWKIGLQDVVLSWHNNHESNNLPM* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1300 433 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Mtr1g1300 433 CDD CIPK_C 309 416 - -
Mtr1g1300 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 425 - -
Mtr1g1300 433 Pfam NAF domain 308 362 IPR004041 GO:0007165
Mtr1g1300 433 PANTHER SERINE/THREONINE KINASE 16 425 - -
Mtr1g1300 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Mtr1g1300 433 SUPERFAMILY Protein kinase-like (PK-like) 20 289 IPR011009 -
Mtr1g1300 433 Gene3D Kinase associated domain 1, KA1 310 420 - -
Mtr1g1300 433 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1300 433 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Mtr1g1300 433 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1300 433 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1300 433 Gene3D Transferase(Phosphotransferase) domain 1 17 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1300 Mtr-Chr1 15528779 15533353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1300 1 425 Miscellaneous Gene Families AT3G23000 57.506 1.47e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Mtr1g1300 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1300 K12761 - gmx:100305372 616.69