Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1296 ATGGAATTCAAGGCAACTGAGCTTAGATTGGGATTACCAGGGACAGATGAAAAGGATATGAAAACAATACATGGTAGTGTTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATGACCAGCATGTGGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTAGGGTGGCCACCAATTAGGTCTTACAGGAAAAACACTTTGCAAGAGGCTGAAGTTGGTGGGATATATGTGAAAGTTAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTGAGGATCTATGGAGGTTATCCAGAACTTCTCAAAGCTCTAGAAACCATGTTCAAATTGACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 561 0.4118 MEFKATELRLGLPGTDEKDMKTIHGSVVKNNKRQLPQTSEESVSISKVSNDDQHVESSSAAPPAKAKIVGWPPIRSYRKNTLQEAEVGGIYVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLGCGV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1296 186 PANTHER AUXIN-INDUCED PROTEIN 1 183 - -
Mtr1g1296 186 Pfam AUX/IAA family 6 183 IPR033389 -
Mtr1g1296 186 Gene3D - 83 186 - -
Mtr1g1296 186 SUPERFAMILY CAD & PB1 domains 82 175 - -
Mtr1g1296 186 MobiDBLite consensus disorder prediction 27 57 - -
Mtr1g1296 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 183 IPR003311 GO:0005634|GO:0006355
Mtr1g1296 186 ProSiteProfiles PB1 domain profile. 89 176 IPR000270 GO:0005515
Mtr1g1296 186 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1296 Mtr-Chr1 15454254 15456552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1296 92 182 B3 DNA Binding Superfamily AT2G46530 37.363 1.43e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr1g1296 AUX_IAA 5.9e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1296 K14484 - gmx:100800212 302.753