Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1294 ATGGTAATCAACTTTATGGAACAATTCCTTCCACTATCGGAAATTGGAAATTTAACGAAAGTAAGTGCATTATCTCTTTTATCAAACGATCTCACTGGGAATATTCCAACAGAAATGAATAGGCTTAACAAATTGAAGATTCTGCAGTTTGGTGATAATAATTTCATAGGTCATTTACCTCCCAATATATGTAGTAGTGGAAAGTTAACTGTGTTCTCGGCTAGAAATACTCAGTTCACAGGTCCAATTCCAAAGAGTTTGAAGAATTGTTCAAGTCTAAAGAGAGTGAGACTTGAACAAAACCAACTTGCTGGAAATATAACAGATAGCTTTGGTGTGTGTCCAAACTTGTACTACATGGAATTGAGTGGTAATAAATATTTTGGCCATATTTCACCTAATTGGGGAAAACGCAAGAATCTCATAAGCCTTAAAATCTCCAACAATAATTTAACAGGGAGTATACCACTAGAATTGGTTGGGGCAACCAATTTACATTTACTTGATTTGTCCTCGAATCAACTAACAGGAGAAATTCCAATGGAGCTAGGCAACTTATCTTCATTGATCCAACAACTCTCGATAAGTAGCAATTACTTTTCAGGGGAAGTTCCTGTACAAATTGCCTCATTGAAGGAAGTTGCTATCTTGGAGCTGGCAACAAATAATTTAAGTGGCTTCGTCCCAAAACAACTTGGAAGATTATCTATGTTATTACACTTAAATATGAGCCAAAATAAGTTTGAAGGAAACATTCCTGATGAGATTGGACAGTTAAAAGTTATTGAAAATCTTGATCTTAGTGGGAATTCTTTGAATGGAACCATACCAACAATGCTTGGACAGTTAAATCGCTTAGAAACATTGAATCTTTTTTGTACCATTCCCTTGACCTATGGTGAGATGTCAGGCTTGACAACTGTTGATATATCATGCAACCAATTGAAGGGTCCAATTCCAAAAATTTCATCCTTCCTACAAGCCCCATTTGAAGCATTAAGAAATAACAAAGGCTTGTGTGCCACTGAAGATTTTGACAGCAAGATCAATCTCATTGGGGTTGGAGTACATGGAAGTGATTACAAAGCAGAGTTGCCTACTGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCACTACCAAATGGAGATGGTAGCATGGACAACATTTTGAAGGACAATGAACAAGCTAGTGAATTTGATTGGAATAGAAGGGTGAATGTCATTAAAGATATAGCTAATGCTTTATGCTATCTACATCATGATTGTTCCCCTCCTATTGTTCATCGAGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTCTCAGACTTTGGAACATCTAAAACTTGCATACACAATGGAAGTAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTAACCTTGGAAATACATTTTGGAAAGCACCCTGGAGATATTGTAACTTATTTGTGGCAACAACCTTCACAAAGTGCTACGGACCTGACAATTGATACTATTCCATTGATGGATATGTTAGACCAACGTCTCCCTCGTCCTACAAATGACATCATTGTTCACAAGGTGGCATCGATGATAAGGATTGCAGTTGCTTGCTTAACTGAAAGCCCGCGTTCTCGCCCTACCATGGAGCAGGTCTGCAAGCAGTTTGTAATGTCATAA 1677 0.3733 MVINFMEQFLPLSEIGNLTKVSALSLLSNDLTGNIPTEMNRLNKLKILQFGDNNFIGHLPPNICSSGKLTVFSARNTQFTGPIPKSLKNCSSLKRVRLEQNQLAGNITDSFGVCPNLYYMELSGNKYFGHISPNWGKRKNLISLKISNNNLTGSIPLELVGATNLHLLDLSSNQLTGEIPMELGNLSSLIQQLSISSNYFSGEVPVQIASLKEVAILELATNNLSGFVPKQLGRLSMLLHLNMSQNKFEGNIPDEIGQLKVIENLDLSGNSLNGTIPTMLGQLNRLETLNLFCTIPLTYGEMSGLTTVDISCNQLKGPIPKISSFLQAPFEALRNNKGLCATEDFDSKINLIGVGVHGSDYKAELPTGQVVAVKKLHSLPNGDGSMDNILKDNEQASEFDWNRRVNVIKDIANALCYLHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTSKTCIHNGSNEKCDVYSFGVLTLEIHFGKHPGDIVTYLWQQPSQSATDLTIDTIPLMDMLDQRLPRPTNDIIVHKVASMIRIAVACLTESPRSRPTMEQVCKQFVMS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1294 558 Gene3D Ribonuclease Inhibitor 3 345 IPR032675 -
Mtr1g1294 558 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 383 558 - -
Mtr1g1294 558 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 341 383 - -
Mtr1g1294 558 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 341 - -
Mtr1g1294 558 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Mtr1g1294 558 Gene3D Transferase(Phosphotransferase) domain 1 382 458 - -
Mtr1g1294 558 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Mtr1g1294 558 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 383 558 - -
Mtr1g1294 558 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 341 383 - -
Mtr1g1294 558 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 341 - -
Mtr1g1294 558 SUPERFAMILY RNI-like 12 320 - -
Mtr1g1294 558 ProSiteProfiles Protein kinase domain profile. 262 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1294 558 Pfam Protein tyrosine and serine/threonine kinase 383 457 IPR001245 GO:0004672|GO:0006468
Mtr1g1294 558 Gene3D Transferase(Phosphotransferase) domain 1 459 557 - -
Mtr1g1294 558 SUPERFAMILY Protein kinase-like (PK-like) 341 554 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1294 Mtr-Chr1 15430457 15432585 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1294 15 553 Receptor kinase-like Gene Family AT5G65700 29.457 5.39e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Mtr1g1294 PK_Tyr_Ser-Thr 4.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1294 - - mtr:MTR_1g040625 943.34