Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1292 ATGTCGTGTCTTCTTTTGTTCTTTTATGTGTTTGTAATGATCAAATCACCTCATGCTGCAACAAAAATCAAAGGCCGTGAGGCAGAGTCTCTGTTGAAGTGGAAAGAAAGCTTTGACAACCAAAGCAAAGCATTACTCTCTTCATGGATTGGTAATAATCCTTGTAGTAGCTGGGAAGGAATCACATGTGATGATGATTCAAAATCCATCAACAAGGTAAATCTCACCAATATTGGACTAAAAGGTACACTTCAAAGTCTCAATTTCTCATCACTTCCAAAAATCCGTACCTTAGTTTTAAGAAACAACTTCCTGTACGGCATTGTTCCACACCATATTGGAGAGATGTCTAGTCTAAAAACTCTTGATTTGTCGATTAACAATCTTTTTGGATCAATACCACTATCCATAGGTAATTTGATTAATTTGGATACTATTAACCTTTCAGAAAATAATATCTCTGGACCACTTCCTTTCACTATAGGAAATTTGACAAAACTCAATATACTATATCTTTACTCAAATGATCTCACCGGACAAATTCCACCTTTCATAGATAATTTAATTAATTTGCATACTCTTTACCTTTCATACAATAATCTCTCTGAACCAATTCCTTTCACTATTGGAAACATGACAAAACTCATTAGATTATCTCTTTTCTCAAATTCTTTCACTAAGAATATTCCAACAGAAATTAATAGGCTTACCGATTTGAAAGCACTCGATTTGTATGATAATAATTTTGTTGGTCATTTACCTCATAATATTTGTGTCGGTGGGAAGTTGGAAAAATTCTCTGCTGCTCTTAACCAGTTCACAGGCCTAGTTCCAGAGAGTTTGAAGAATTGCTCAAGCCTTAAGAGACTGAGGCTTGAACAAAACCAACTGACTGGAAATATAACAAATAGTTTTGGTGTGTATCCAAACTTGGACTACATGGAATTGAGTGATAATAATTTGTATGGTCAAATTTCTCCAAATTGGGGAAAGTGCAAGAATCTCACAAGCCTTAAAATCTCCAACAATAATTTGACAGGAAGCATACCACCAGAACTAGGCAGAGCAACAAATTTACATGAACTTAACTTGTCTTCAAACCATCTTACGGGGAAAATTCCAAAGGAGCTAGAAAACTTATCTTTGTTGATCAAACTCTCGTTAAGTAACAATCATCTTTCTGGAGAAGTTCCTGAACAAATTGAATCATTGCACGAATTAACTGCATTGGAGCTTGCAGCAAATAATTTCAGTGGCTTCATCCCTGAAAAACTTGGTATGTTGTCTAGGTTATTGAAGTTAAATTTGAGCCAAAATAAGTTTGAGGGGAACATTCCTGTTGAGTTTGGCCAATTGAATGTTATTGAAAATCTTGATCTTAGTGGGAATTCTATGAATGGAACCATACCAGCAATGCTTGGCCAGTTAAATCACTTAGAAACATTGAATCTCTCACATAACAATCTCTCTGGTACCATTCCCTCAAGCTTTGTTGATATGTTAAGCTTGACAACTGTTGATGTATCTTACAACCAGTTGGAGGGTCCGACTCCAAACATTACAGCTTTCGGAAGAGCTCCAATTGAAGCATTGACAAATAACAAGGGCTTGTGTGGTAATATCTCTGGCCTAGAGCCTTGCTCAATATCTGGTGGCAAGTTTCATAATCATAAGACAAACAAAATTTGGGTGCTAGTTCTATCACTCACTCTAGGTCCTCTACTGTTAGCATTAATTGTTTATGGGATCTCATACTTTTTTTGTCGAACTTCAAGCACAGAAGAATACAAGCCTGCACAAGAATTTCAAATTGAAAATCTATTTGAAATATGGAGCTTTGATGGCAAAATGGTGTATGAGAACATAATCGAAGCCACGGAAGATTTTGACAACAAACATCTCATTGGGGTTGGAGGACATGCAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTTCATTTATTACAAAATGAAGAAATGTCTAATATGAAAGCTTTCACAAATGAGATTCATGCTTTGACAGAAATTCGACATCGCAACATTGTGAAGTTATACGGGTTTTGTTTACATCGACTACACTCATTTTTGGTTTATGAATTCTTGGAGAAGGGTAGTGTGGACATCATTTTGAAGGACAATGAACAAGCTGCTGAATTTGATTGGAATAAGAGGGTGAATATTATTAAAGATATAGCTAATGCCTTATGCTATCTGCATCATGATTGTTCCCCTCCTATAGTTCATCGAGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTCTCAGATTTTGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATATGACTTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTTTAGTTTTGGGATATTAACCTTGGAAATACTTTTTGGAAAGCACCCTGGAGATATTGTAACTTATTTGTGGCAACAACCTTCACAAAGTGTTATGGACATGAGACCTGATACTATGCAATTGATAGATAAGTTGGACCAGCGTGTCCCTCATCCCACAAATACCATTGTTCAAGAAGTGGCATCGATGATAAGGATTGCAGTTGCTTGCTTAACTGAAAGCCCGCGTTCTCGCCCTACCATGGAGCAGGTCTGCAGACAGTTTGTAATGTCATAA 2721 0.3657 MSCLLLFFYVFVMIKSPHAATKIKGREAESLLKWKESFDNQSKALLSSWIGNNPCSSWEGITCDDDSKSINKVNLTNIGLKGTLQSLNFSSLPKIRTLVLRNNFLYGIVPHHIGEMSSLKTLDLSINNLFGSIPLSIGNLINLDTINLSENNISGPLPFTIGNLTKLNILYLYSNDLTGQIPPFIDNLINLHTLYLSYNNLSEPIPFTIGNMTKLIRLSLFSNSFTKNIPTEINRLTDLKALDLYDNNFVGHLPHNICVGGKLEKFSAALNQFTGLVPESLKNCSSLKRLRLEQNQLTGNITNSFGVYPNLDYMELSDNNLYGQISPNWGKCKNLTSLKISNNNLTGSIPPELGRATNLHELNLSSNHLTGKIPKELENLSLLIKLSLSNNHLSGEVPEQIESLHELTALELAANNFSGFIPEKLGMLSRLLKLNLSQNKFEGNIPVEFGQLNVIENLDLSGNSMNGTIPAMLGQLNHLETLNLSHNNLSGTIPSSFVDMLSLTTVDVSYNQLEGPTPNITAFGRAPIEALTNNKGLCGNISGLEPCSISGGKFHNHKTNKIWVLVLSLTLGPLLLALIVYGISYFFCRTSSTEEYKPAQEFQIENLFEIWSFDGKMVYENIIEATEDFDNKHLIGVGGHASVYKAELPTGQVVAVKKLHLLQNEEMSNMKAFTNEIHALTEIRHRNIVKLYGFCLHRLHSFLVYEFLEKGSVDIILKDNEQAAEFDWNKRVNIIKDIANALCYLHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVFSFGILTLEILFGKHPGDIVTYLWQQPSQSVMDMRPDTMQLIDKLDQRVPHPTNTIVQEVASMIRIAVACLTESPRSRPTMEQVCRQFVMS* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1292 906 Pfam Leucine rich repeat 406 464 IPR001611 GO:0005515
Mtr1g1292 906 Pfam Leucine rich repeat 472 513 IPR001611 GO:0005515
Mtr1g1292 906 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Mtr1g1292 906 Pfam Leucine Rich Repeat 358 380 IPR001611 GO:0005515
Mtr1g1292 906 SUPERFAMILY L domain-like 27 312 - -
Mtr1g1292 906 SUPERFAMILY Protein kinase-like (PK-like) 612 902 IPR011009 -
Mtr1g1292 906 Gene3D Ribonuclease Inhibitor 264 553 IPR032675 -
Mtr1g1292 906 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Mtr1g1292 906 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 151 - -
Mtr1g1292 906 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 127 906 - -
Mtr1g1292 906 Gene3D Phosphorylase Kinase; domain 1 590 707 - -
Mtr1g1292 906 SMART LRR_typ_2 428 452 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 476 499 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 380 404 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 164 187 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 332 356 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 188 212 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 236 260 IPR003591 -
Mtr1g1292 906 SMART LRR_typ_2 116 140 IPR003591 -
Mtr1g1292 906 SUPERFAMILY L domain-like 271 539 - -
Mtr1g1292 906 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 127 906 - -
Mtr1g1292 906 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 151 - -
Mtr1g1292 906 ProSitePatterns Tyrosine protein kinases specific active-site signature. 753 765 IPR008266 GO:0004672|GO:0006468
Mtr1g1292 906 ProSiteProfiles Protein kinase domain profile. 629 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1292 906 ProSiteProfiles Leucine-rich repeat profile. 358 381 IPR001611 GO:0005515
Mtr1g1292 906 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Mtr1g1292 906 Pfam Protein kinase domain 630 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1292 906 Gene3D Transferase(Phosphotransferase) domain 1 708 905 - -
Mtr1g1292 906 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524
Mtr1g1292 906 Gene3D Ribonuclease Inhibitor 181 263 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1292 Mtr-Chr1 15413466 15416707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1292 80 801 Receptor kinase-like Gene Family AT4G08850 45.144 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1292 Pkinase 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1292 - - mtr:MTR_1g040615 1321.22