Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1290 ATGCTTCAAAGAAATAAGCTATTACCAATGTCGTGTCTTATTTTGTTCTTCTATGTGTTTGTAATTGCCACATCCACATCACCTCATGCTGCAAGAAAAAACCAAGGTAGTGAGGTTGATGCTCTGTTGAAATGGAAGGCAAGCCTTGACAACCACAGCAGGGCATTGCTCTCTTCATGGATTGGCAATAATCCTTGTAGTAGTTGGGAAGGAATCACGTGTGATTATCAATCAAAATCCATCAACATGATAAATCTCACCAATATTGGACTAAAAGGAAGCATACCACCAGAACTAGGCAGAGCAACAAATTTACAGGAGCTTAACTTGTCTTCAAACCATCTAATGCGAAAAATTCCAAAGGAGTTAGAAAACTTATCTTTGTTGATCAAACTCTCGTTAAGTAACAATCATCTTTATGGAGAAGTTCCAGTACAAATTGCATCATTGCATCAACTAACTGCATTGGAGCTTGCAACAAATAATTTGAGTGGATTCATCCCTGAAAAACTTGGTATGTTGTCTATGTTATTGCAGTTAAATTTGAGCCAAAATAAGTTTGAGGGGAACATTCCTGTTGAGTTTGGCCAATTGAATGTTATTGAAAACCTTGATCTTAGTGGGAATTCTATGAATGGAACCATACCAGCAATGCTTGGCCAGTTAAATCACTTAGAAACATTGAATCTCTCACATAACAATCTCTCTGGTACCATTCCCTTAAGCTTTGTTGATATGTTAAGCTTGACAACTGTTGATATATCTTACAACCAGTTGGAGGGTCCGACTCCAAACATTACAGCTTTCGAAAGAGCTCCAATTGAAGCACTGAGAAATAACAAAGGCTTGTGTGGTAATGTTTCTGGCCTAGAGCCTTGCTCAACATCGGGTGGCACCTTTCATAGTCATAATACTAACAAAATTTTGGTGCTAGTTCTATCCCTCACTCTCGGCCCTCTATTGTTAGCATTGATTGTTTATGGGATCTCATACCTTTTTTGTCGAACTTCAAGCACAAAAGAATACAAGCCTGCACAAGAATTGAAAATTGAAAATCTATTTGAAATATGGAGCTTTGATGGAAAAATGGTGTACGAGAACATAATCGAAGCCACAGAAGATTTTGACAACAAGCATCTCATTGGGGTTGGAGGACATGGAAATGTTTACAAAGCAGAACTGCCTACAGGTCAAGTTGTAGCTGTGAAGAAACTTCACTCATTACAAAATGAAGAAATGCCAAATAGGAAAGCTTTCACAAATGAGATCCATGCTTTGACAGAAATTCGACATCGCAACATTGTGAGGTTATACGGCTTTTGTTCACATCGACTACACTCATTTTTGGTTTATGAATTCTTGGCGAAGGGTAGCATGGACAACATTTTGAAGGACAATGAACAAGCTGGCGAATTTGATTGGAATAAGAGGGTGAATATCATTAAAGATGTAGCTAATGCTTTATGCTATCTGCATCATGATTGTTCCCCTCCTATTGTTCATCGAGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTCTCAGATTTTGGAACATCTAAGTTTCTAAATCCCAATTCGTCCAATATGACTTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTTTAGTTTTGGGATATTAACCTTGGAAATGCTTTTTGGAAAGCACCCTGGAGATATTGTAACTTATTTGTGGCAACAACCTTCGCAAAGTGTTACGGACCTGAGACTTGATACAATGCCATTGATAGATAAGTTGGACCAGCGTCTCCCTCATCCCACAAAAACCATTGTTCAAGAGGTGGCATCGATGATAAGGATTGCAGTTGCTTGCTTAACTGAAAGCCCACATTCTCGCCCTACTATGGAGCAGGTCTGCAGGCAGTTTTTAATGTCATAA 1959 0.3859 MLQRNKLLPMSCLILFFYVFVIATSTSPHAARKNQGSEVDALLKWKASLDNHSRALLSSWIGNNPCSSWEGITCDYQSKSINMINLTNIGLKGSIPPELGRATNLQELNLSSNHLMRKIPKELENLSLLIKLSLSNNHLYGEVPVQIASLHQLTALELATNNLSGFIPEKLGMLSMLLQLNLSQNKFEGNIPVEFGQLNVIENLDLSGNSMNGTIPAMLGQLNHLETLNLSHNNLSGTIPLSFVDMLSLTTVDISYNQLEGPTPNITAFERAPIEALRNNKGLCGNVSGLEPCSTSGGTFHSHNTNKILVLVLSLTLGPLLLALIVYGISYLFCRTSSTKEYKPAQELKIENLFEIWSFDGKMVYENIIEATEDFDNKHLIGVGGHGNVYKAELPTGQVVAVKKLHSLQNEEMPNRKAFTNEIHALTEIRHRNIVRLYGFCSHRLHSFLVYEFLAKGSMDNILKDNEQAGEFDWNKRVNIIKDVANALCYLHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVFSFGILTLEMLFGKHPGDIVTYLWQQPSQSVTDLRLDTMPLIDKLDQRLPHPTKTIVQEVASMIRIAVACLTESPHSRPTMEQVCRQFLMS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1290 652 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Mtr1g1290 652 ProSiteProfiles Leucine-rich repeat profile. 224 245 IPR001611 GO:0005515
Mtr1g1290 652 ProSiteProfiles Protein kinase domain profile. 375 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1290 652 ProSitePatterns Protein kinases ATP-binding region signature. 381 404 IPR017441 GO:0005524
Mtr1g1290 652 PRINTS Leucine-rich repeat signature 201 214 - -
Mtr1g1290 652 PRINTS Leucine-rich repeat signature 222 235 - -
Mtr1g1290 652 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 93 - -
Mtr1g1290 652 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 92 652 - -
Mtr1g1290 652 SUPERFAMILY Protein kinase-like (PK-like) 357 648 IPR011009 -
Mtr1g1290 652 Gene3D Transferase(Phosphotransferase) domain 1 454 651 - -
Mtr1g1290 652 SUPERFAMILY L domain-like 37 285 - -
Mtr1g1290 652 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515
Mtr1g1290 652 ProSiteProfiles Leucine-rich repeat profile. 104 127 IPR001611 GO:0005515
Mtr1g1290 652 ProSitePatterns Tyrosine protein kinases specific active-site signature. 499 511 IPR008266 GO:0004672|GO:0006468
Mtr1g1290 652 Gene3D Ribonuclease Inhibitor 151 286 IPR032675 -
Mtr1g1290 652 Pfam Protein kinase domain 376 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1290 652 Gene3D Ribonuclease Inhibitor 37 150 IPR032675 -
Mtr1g1290 652 Pfam Leucine rich repeat 202 259 IPR001611 GO:0005515
Mtr1g1290 652 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 93 - -
Mtr1g1290 652 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 92 652 - -
Mtr1g1290 652 Gene3D Phosphorylase Kinase; domain 1 336 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1290 Mtr-Chr1 15398464 15401706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1290 67 547 Receptor kinase-like Gene Family AT4G08850 44.764 1.30e-133 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1290 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1290 - - mtr:MTR_1g040615 967.607