Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1287 ATGGAACAGTTTTTTCCTGAAAATCTTCTAGGTGATGTATTTTGGGATGAACCTCTTTTACCTACAAACCAAAGTAGTTTTGTTCTAACACAACCTTGTCCTACACCAAATCTAAGTGCTTTTGTTCAATATAGAGACCAACCCAATATTAGTTTTGGGGAACAAAGTTTTCTAAAAGGGTCCAATTCAAATAACATGAACAAGAGGATGATTGCATTTTTGAGAAAAAGTTTGCCTTTAGAGAGAAATAAAGTAGCAGAATGTGAAAGAGAACGTGGTTTCAAGCACATGATTAGTGAAAGAATGAGGAGACAAAGACAAAGACAATGTTGCTTCAATTTACATGCAGTGTTGCCTCATGGAACCAAAACAGATAATAATTCTGTAGTTCAAACAGCAGCTAAGGAAATTCAAAGGCTACAAGGATGCAAAGAGGAATTGGAAAGGAAAAACTTTGTTCTTGAAGAAAATGTTGAAGTAATTGACAGAAGAAAACAAATTCAATATTTGAGAGTGCCATGTCCTACATCTGGAATTGATTCTATAGTTGAGACACTGAAATTGTTGAAAAACCATGGTGTTGATACAAGAAGCATCAAGTCAAATTTTTCTCAGCAGGAGTTGTTTTTAGTCTTAGAGATAGAATCTGAGATTGCAGGAACTGATGTGGAAAAGGCTATTAAGAGATTACTTGATGAACTTGAGTGGAAGCTTCATTCTCATGTCCCGGAAGGTTCAAATAAGCAAATAATAGAATATGAAGAGTTTGGATAA 774 0.3475 MEQFFPENLLGDVFWDEPLLPTNQSSFVLTQPCPTPNLSAFVQYRDQPNISFGEQSFLKGSNSNNMNKRMIAFLRKSLPLERNKVAECERERGFKHMISERMRRQRQRQCCFNLHAVLPHGTKTDNNSVVQTAAKEIQRLQGCKEELERKNFVLEENVEVIDRRKQIQYLRVPCPTSGIDSIVETLKLLKNHGVDTRSIKSNFSQQELFLVLEIESEIAGTDVEKAIKRLLDELEWKLHSHVPEGSNKQIIEYEEFG* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1287 257 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 243 IPR044658 -
Mtr1g1287 257 Coils Coil 130 164 - -
Mtr1g1287 257 PANTHER TRANSCRIPTION FACTOR BHLH92 1 243 - -
Mtr1g1287 257 Pfam Helix-loop-helix DNA-binding domain 96 141 IPR011598 GO:0046983
Mtr1g1287 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Mtr1g1287 257 SMART finulus 97 146 IPR011598 GO:0046983
Mtr1g1287 257 Gene3D - 91 171 IPR036638 GO:0046983
Mtr1g1287 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 156 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1287 14 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 34.928 4.52e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1287 - - gmx:100815874 281.567