Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1278 ATGGCCCATGCTCTAGTGTTCACGGTGAAGAGGCGTGAACCTGAACTGATAACTCCATCAAAACCCACACCTCATGAAACAAAACTACTCTCAGACATTGATGACCAAGATTCATTACGTTGGCAAGTTCCTGGGATACAATTTTATAAATATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGATTAAGGGAAGGTCCGGGTAGGAAACTTATGGTGGATTGCACTGGAGAAGGTGTTTTGTTTATTGAAGCTGATGCAGATGTTAGTTTGAAAGAATTTGGTGAAGATCTTCATCCTCCATTTCCTTGCATAGATGAGCTTCTTTATGATGTTCCTGGTTCTTCAGATATGCTTAACACTCCATTGCTGCTTATTCAGGTAACACGCCTCAAGTGTGGTGGTTTCATTTTTGCTTTCCGTATGAACCATACAATGAGTGATGGATCAGGTATGCTTCAATTCTTGAATGCCTTAGGAGAAATATCTCGTGGGATGAGTAAACCTTCAATCTCACCAGTGTGGAGCAGAGAGCTTCTTAATGCAAGGGATCCACCAATAGTGACATGTACTCATCGTGAATACGATCCAGAACCCGACAACAAAGGAACCATGTTTCCCTTAGACGACATGGTTCACCGCACTTTCTTCATTGGTCCGACCGAGGTAGCTGCAATTCGCTCTCTCCTTCCGACTCACCAATTGCAAAAATACTCCAATTTTGAAGTCATAGCCGCATACTTTTGGCGTTGTCGTACAATAGCATTACAACTAGATTCTAACGAAGAAGTTCGCATGATCTGCCTAGTCGATGCACGTAACAAATCTGTTTACAAACAACTTCCAAAAGGTTATTATGGTAACGCTATAGCGTTTCCCGTTGCGGTTACAACTGCAGGAAAACTTATTGAAAATCCACTGGAGTATGCATTGAATTTAGTTAAGAAAGCAAAAGCTAATGTCAACAAAGAGTATATGCATTCAGTGGCAGATTTAATGGTTATCAAGGGTCGTCCTCCTTTAACTACTGCTGGATTATATTTAGTGTCTGATATTACACGTGCTGGACTTGGAGATGTTGAATTTGGTTGGGGGAAAGCTCTCTATGGAGGAATGGCTAAAGGAGGTGATGTTGCTATTCCTGGTCAAGCTGTATTTCATATACCTTTCAAAAATGCTAAAGGAGAAGAAGGTTTGGTTATACCGTTTTTCTTGCCTGCTCAAGTCATGGAGAGGTTGGTTAAAGAGTTCCATAGCTTGCTTATGTGCATGCATACTAAGAGTGATCCAAAATCTGGTTTCATTAACTCTTCTTTGTAG 1377 0.4052 MAHALVFTVKRREPELITPSKPTPHETKLLSDIDDQDSLRWQVPGIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPGRKLMVDCTGEGVLFIEADADVSLKEFGEDLHPPFPCIDELLYDVPGSSDMLNTPLLLIQVTRLKCGGFIFAFRMNHTMSDGSGMLQFLNALGEISRGMSKPSISPVWSRELLNARDPPIVTCTHREYDPEPDNKGTMFPLDDMVHRTFFIGPTEVAAIRSLLPTHQLQKYSNFEVIAAYFWRCRTIALQLDSNEEVRMICLVDARNKSVYKQLPKGYYGNAIAFPVAVTTAGKLIENPLEYALNLVKKAKANVNKEYMHSVADLMVIKGRPPLTTAGLYLVSDITRAGLGDVEFGWGKALYGGMAKGGDVAIPGQAVFHIPFKNAKGEEGLVIPFFLPAQVMERLVKEFHSLLMCMHTKSDPKSGFINSSL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1278 458 Pfam Transferase family 9 437 - -
Mtr1g1278 458 PANTHER ALCOHOL ACYLTRANSFERASE 7 442 - -
Mtr1g1278 458 Gene3D - 213 436 IPR023213 -
Mtr1g1278 458 Gene3D - 4 212 IPR023213 -
Mtr1g1278 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1278 Mtr-Chr1 15163031 15166191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1278 9 395 Monolignol Biosynthesis Gene Families AT5G48930 29.877 7.78e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1278 K19861 - gmx:100797017 647.506