Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1277 ATGGAAGCAGCAACATCAACTTGCTTCTTCTGTGGTAGAATCCCATCAAAATCCAAACTAGCTTCATCTTCATCATTTGGATCATTTTGTTTATTAACACGCAACAATGTTACTACAATCATGTGCAAAACATCATTAAAAACACACAACCGTGTAGTTCAAAACATCACAAACAGCAATGAAACAAAGGTTCCAAGCACCACAAAAAGAAGAAGAAGGAGAAGAAAAAATGATGCAGCAATAGAAATTCAACTACCCTTTGAGAATATGAACAAGAATCTTCACGTGCATGAGAATATAGGTGACCCTATTGGTTGGAAAGATGTTGGAAAAAGTGTAGTAAGTTGGATACGTGAGAGTATGAAATCTATGGCATTTGAGATTGCTTCTGCTGAGTTACTTGAAGATTTGGAGTTTTCTGAAATGAAACAAAGAATGGGACCTGGTCTTACGTTTGTTATTCAAGCACAACCTTATTTGAATGCTGTTCCTATGCCACTTGGTCTTGAAGTTACTTGTTTGAAAGCTTGTACTCATTATCCTACTCTTTTTGATCATTTTCAAAGAGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAAGGTTTGGTTGAAGATTGGCGTCAAACTCAGTCTTGGAAGTTGCTTAAGGAGCTTGCTAATTCAGCTCAGCACAGGGCAGTTGCAAGGAATGCAACACAGCCAAAGAGTGTCCAAGGAGTTTTAGGAATGGATAGAGAAAGAGTCAAAGTGATACAGCAAAGGATTGATGAATTCACTCAAAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTAAACAAGATGATGCTTCCGATCCGTCGAAACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTATGTGACACCATCTGTAATTTAAATGCCATCAGTACATCTACAGGATTGGGAGGAATGCACCTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCACCTACTACTCTTTCACCCGGAGAAATGGTTTGTGTGAGAACATGTGACAGCAAGGGTGCAGTTACAACTTCTTGCATGCAAGGAGTTGTGGAAAATCTTGGTGACGATGGCTATAGTATTACCGTTGCTTTAGAGTCACGCCATGGTGATCCTACGTTCTCTAAACTGTTTGGAAAGAATGTGCGCATTGATCGTATTCAAGGATTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAGAAGAATGGTTTGCAAAAGAAAAATCCATCAATTTCTGTTGTTGCAACTCTATTTGGCGAAGCAGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTAAACTGGGAAGAAGAAAAAACAAATGGAGCATTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCGTTAGGTTTGAATAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCCGGTACAGGCAAGACCGGTTTACTCAAGCAAATAATAACATGCGCCGTGGAACAAGGTGAAAGGGTTCTTGTCACAGCACCTACCAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGAGTTGGAAATCCCGCTCGTATATCAAAAACAGGAGCATCAAAGTCCTTAGGAGAAATTGTAAATGCAAAGCTTGCAAGTTTTCGCGAAGAGTGTGAGAGGAAGAAATCTGATCTAAGGAAAGATCTAAGACAATGTTTGAGGGATGATTCATTAGCTGCAGGCATACGCCAACTTCTGAAACAGTTGGGAAAGTCGCTAAAGAAAAAGGAAAAGCAGACTATAAATGAAGTTCTATCTGGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCCGATCCCATGATTCGAAAGCTAAATGCTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCGATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCGAAACGCTGCATTCTTGCTGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAGGCATTAGAAGGTGGTTTAGGAATATCGCTACTCGAGAGAGCTGCAACTCTGCATGAAGGGATTCTCACCACTAGGTTAACGACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCGAAGGAGATGTATGGAGGATTGTTGAAGTCCTCTAAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCTCTACTACTGCTTGACACTCGAATGCCATACGGAAGTCTTTCAATTGGCTGTGAAGAGCATCTCGACCAGGCTGGAACAGGCTCGTTGTACAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTATTTTCCTTAATTTATGCTGGTGTTAGCCCAAATGCTATTGTAGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGACGGGGTTCCTGAAGCTGCCGGTACTGAAGTTTCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCGCGCAAGCATTTAGCTATAGTCTGTGACAGCTCAACTATATGCCATAACACATTCCTAGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTAGAACCAGATAGTTTTGGAGGAGGGTTTGGACTTGGCATGAATCCAATGTTACCTTCTATGGATTAG 2865 0.4143 MEAATSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVTTIMCKTSLKTHNRVVQNITNSNETKVPSTTKRRRRRRKNDAAIEIQLPFENMNKNLHVHENIGDPIGWKDVGKSVVSWIRESMKSMAFEIASAELLEDLEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVTCLKACTHYPTLFDHFQRELRDVLQDMQSKGLVEDWRQTQSWKLLKELANSAQHRAVARNATQPKSVQGVLGMDRERVKVIQQRIDEFTQNMSELLNIERDVELEFTQEELDAVPKQDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVENLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLQKKNPSISVVATLFGEAEDAAWLEKNSLVNWEEEKTNGALGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQIITCAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPARISKTGASKSLGEIVNAKLASFREECERKKSDLRKDLRQCLRDDSLAAGIRQLLKQLGKSLKKKEKQTINEVLSGAQVVLATNTGAADPMIRKLNAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSIGCEEHLDQAGTGSLYNEGEADIVLQHVFSLIYAGVSPNAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAIVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGGFGLGMNPMLPSMD* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1277 954 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 45 953 - -
Mtr1g1277 954 Coils Coil 580 600 - -
Mtr1g1277 954 CDD DEXXQc_SMUBP2 478 728 - -
Mtr1g1277 954 Gene3D - 727 936 IPR027417 -
Mtr1g1277 954 Gene3D - 282 413 - -
Mtr1g1277 954 CDD SF1_C_Upf1 729 925 IPR041679 -
Mtr1g1277 954 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 45 953 - -
Mtr1g1277 954 Coils Coil 249 269 - -
Mtr1g1277 954 Pfam AAA domain 705 908 IPR041679 -
Mtr1g1277 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 915 IPR027417 -
Mtr1g1277 954 MobiDBLite consensus disorder prediction 58 77 - -
Mtr1g1277 954 Pfam AAA domain 479 696 IPR041677 GO:0004386
Mtr1g1277 954 Gene3D - 265 711 IPR027417 -
Mtr1g1277 954 SMART ultradead3 475 727 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1277 Mtr-Chr1 15142474 15148784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1277 477 668 Core DNA Replication Machinery Family AT1G08840 27.604 1.94e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1277 - - aip:107625008 1482.62