Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1273 ATGTATTTTGTTCGGGTTCATTTCTGTGACATCATTAGCAATTCACTAAACAACAATATGGCTTTCAATTTATTTATAAATGAAGCATTTGCTGTTAGAAATCTCACTCTTTCATCAAAAGCCAAGGGACATGCTGTGCCATATTACTACGACTTCATCTCGCACGCCTCAGGAAACACTATGAAAGTGAGTGTGAGTATTAATCATGATGCAATGAATGAAACGTTAAATGCAATCATGAATGGTGTTGAGATATTGAAGATTAGCAACAACGTAAGTGGCTTGAATGAGTTTTCTTCTTTTCAAAGTCTTCCTTCTAGTGTTCCGCATTCACCAAAAATAAGTTTGCAAAGAAGTAGAAAACTAGGGATTTGGTTGATCATCATTTTAACCGGTTGCAGTGTGTGTGTTTTGGCATTTTTAGTATTTGGTGGACTATCATTTTATTACTTGAAAGCTTGCAGGAGGAAGAAGAAATCGGTAACTAATTTTGAGCTTCCGAGACATTTTACTTTACTTGAGATGCAACAAGCAACAAATTGTTTTGACGCTGAGCTAATAATTGGAAAAGGAGGATTTGGAAAAGTGTATAAAGGAACGCTTGAAAATGGAGAAGTAGTAGCTATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCGATGAATTCCACAACGAGATTGAGTTGTTGTCTGGTCTTAGTCATTCAAACCTTGTCTCACTTGTAGGTTGTTGTAACGAAGACTCAGAACTGATTCTTGTGTACAATTACATGGCAAATGGATCTCTCAGCAGTCATCTATATGGGAGAGACTTTGTTCCTCTATCTTGGAAGCAACGCCTAATGATATGCTTAGGGGCTGCAAAGGGACTTTTATATCTTCACACTGGAGCTAAAGAAAGCATAATTCACCGTGACATAAAGACAACAAACATTCTCTTGGACGAAAATCTTGTACCAAAAGTTGCTGATTTTGGCATATCGAAAAAGGGTCCTATTCTTGATAAGAGTCACGTTACAACTAATGTAAAGGGTAGTTTTGGCTACGTTGATCCAGAATATTTTAGGACTAAGTTTCTAACTAAGAAATCAGATGTTTTCTCTTTTGGAGTGGTGTTGATTGAAGTTATATGTGGAAAACCTGCTTTAGATGATGCCCTTCCAACGCAACAGATGAATTTGGCAATGTGGGCATTAAGTTGCGATAAAAAGGGTACCTTTCATGAAATGATGGACCCATATTTGATTGGCAAAGTGAATATGGATTCTCTAAACAAGGTTTTAGAGTTGGCATGGAAGTGCTTGGAGGAGCGTCGGGAGAACAGACCACCGATGGGGTATGTATTATGTCAACTAGAAGAGGCTCTCCATCTTGAGTTGGCATCACATGTTTCGAATGAGAATGAGGATTCTTCTATTCACTCCAGTGTAGGAAGTGGATTTACGGATGAAATTGAAGATGTTGTTAACCATAGCCTCCTAATTCAACAACTCATTTGTTAA 1503 0.3772 MYFVRVHFCDIISNSLNNNMAFNLFINEAFAVRNLTLSSKAKGHAVPYYYDFISHASGNTMKVSVSINHDAMNETLNAIMNGVEILKISNNVSGLNEFSSFQSLPSSVPHSPKISLQRSRKLGIWLIIILTGCSVCVLAFLVFGGLSFYYLKACRRKKKSVTNFELPRHFTLLEMQQATNCFDAELIIGKGGFGKVYKGTLENGEVVAIKVANPESRQGLDEFHNEIELLSGLSHSNLVSLVGCCNEDSELILVYNYMANGSLSSHLYGRDFVPLSWKQRLMICLGAAKGLLYLHTGAKESIIHRDIKTTNILLDENLVPKVADFGISKKGPILDKSHVTTNVKGSFGYVDPEYFRTKFLTKKSDVFSFGVVLIEVICGKPALDDALPTQQMNLAMWALSCDKKGTFHEMMDPYLIGKVNMDSLNKVLELAWKCLEERRENRPPMGYVLCQLEEALHLELASHVSNENEDSSIHSSVGSGFTDEIEDVVNHSLLIQQLIC* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1273 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Mtr1g1273 500 PANTHER OS07G0166700 PROTEIN 2 475 IPR045272 GO:0004714|GO:0006468
Mtr1g1273 500 Gene3D Phosphorylase Kinase; domain 1 152 257 - -
Mtr1g1273 500 Pfam Malectin-like domain 2 87 IPR024788 -
Mtr1g1273 500 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Mtr1g1273 500 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 2 475 - -
Mtr1g1273 500 Pfam Protein tyrosine and serine/threonine kinase 187 449 IPR001245 GO:0004672|GO:0006468
Mtr1g1273 500 Gene3D - 1 90 - -
Mtr1g1273 500 CDD STKc_IRAK 188 454 - -
Mtr1g1273 500 ProSiteProfiles Protein kinase domain profile. 182 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1273 500 Gene3D Transferase(Phosphotransferase) domain 1 258 479 - -
Mtr1g1273 500 SUPERFAMILY Protein kinase-like (PK-like) 162 452 IPR011009 -
Mtr1g1273 500 SMART serkin_6 182 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1273 Mtr-Chr1 15082360 15084813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1273 2 461 Receptor kinase-like Gene Family AT2G21480 45.749 2.07e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Mtr1g1273 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1273 - - mtr:MTR_8g467150 649.818