Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1262 ATGGAAGACTTGTATTTTGTGTATAAATATCTCCCATGGCATTATAACAACAAGTCTCTTAGTCTAATACGTAACTTTCTTTGTGTCCAAATTTCCAAAATGTTTCAGAAGATGAAGCCCTTACCATTGTTGTGTGTTCGTCTGTTCTTCTATGTGTTTGTAATAGCCACATCACCTCATGCCACAACAAAAATCCAAGGCAGCGAAGTAGATGTTCTATTGAAGTGGAAAGCAAGCTTTGACAACCATAGTAGGGCATTGCTCTCTTCATGGATCGGTAACGATCCTTGTAGTAGTTGGGAAGGAATCACATGTTGTGATGACTCAAAATCTATCTGCAAGTTAAATCTCACCAATATTGGCCTAAAAGGTATGCTTCAAAGTCTCAATTTCTCATCACTTCCAAAAATCCGCATCTTAGTTTTAAAAAACAATTCCTTTTACGGAGTTGTTCCTCACCATATTGGGGTGATGTCAAATCTGGAAACTCTTGATTTATCACTTAATAGACTCTCTGGTAACATTCCCAGTGAAGTTGGAAAGCTCAATTCCCTTACCACAATCCAATTGTCAGGAAACAACCTCTCTGGGCCAATCCCATCATCCATTGGTAATTTGATCAAATTGACTTCTATTCTTCTTGATGATAATAAACTCTGCGGACATATTCCTTCCACTATTGGAAATTTGACAAAACTCACTAAGTTATCTCTTATTTCAAATGCTCTCACTGGAAATATTCCAACTGAAATGAATAGGCTTACTAATTTTGAAATTCTCCAGTTATGCAATAATAATTTCACAGGTCATTTACCTCACAATATATGTGTTAGTGGAAAGTTAACTCGTTTCTCCACTAGTAATAACCAGTTCATTGGTCTAGTTCCAAAGAGTTTAAAAAATTGCTCAAGCCTTAAGAGAGTGAGACTTCAACAAAACCAACTGACTGCAAATATAACAGATAGCTTTGGTGTGTATCCGAATTTGGAATATATGGAATTGAGTGATAATAATTTTTATGGTCATCTCTCTCCAAATTGGGGAAAGTGCAAGAATCTCACAAGCCTTAAAGTTTTCAATAATAATATATCAGGAAGCATACCACCCGAATTGGCCGAAGCAACCAATTTAACTATACTGGACCTTTCCTCGAATCAACTCACAGGAGAAATTCCAAAGGAGCTAGGAAACTTATCCTCATTGATCCAGCTCTTGATAAGTAGCAATCATCTTGTAGGAGAAGTTCCTGAACAAATTGCATTATTGCATAAAATAACTATCTTGGAGCTTGCAACAAATAATTTCAGTGGCTTCATCCCAGAACAACTTGGAAGATTACCTAATTTATTGGACTTGAATTTGAGCCAAAATAAGTTTGAAGGAGACATTCCTGCTGAGTTTGGACAATTGAAAATTATTGAAAATCTTGATCTTAGCGAGAATGTTTTGAATGGAACCATACCAACAATGCTTGGAGAGTTAAATCGCTTAGAAACATTGAATCTCTCACATAATAATTTTTCTGGTACCATTCCCTTGACCTATGGTGAGATGTCAAGCTTAACAACTATTGATATATCATACAACCAATTTGAAGGTCCAATTCCAAACATTCCAGCCTTCAAAAATGCTCCAATTGAAGCATTAAGAAATAACAAAGGCTTGTGTGGTAACTCTGGCTTAGAGCCTTGCTCAACATTAGGTGGTAACTTTCATAGTCATAAGACTAAACACATTTTGGTGGTTGTTTTACCCATCACTCTAGGCACTCTATTGTCAGCATTATTTCTTTATGGCCTCTCATGCCTTTTATGTCGAACTTCAAGCACAAAAGAATACAAGACTGCAGGAGAATTTCAAACTGAAAATCTATTTGCAATATGGAGCTTTGATGGAAAATTGGTGTATGAGAACATTGTTGAAGCAACTGAAGAGTTTGACAACAAGCATCTCATTGGGATAGGAGGACACGGAAGTGTTTACAAAGCAGAGTTCCCCACAGGACAAGTTGTAGCGGTGAAGAAACTCCATTCATTACAAAATGGAGAGACGTCCAATCTGAAAGCTTTCGCAAGTGAGATCCAAGCTTTAACTGAAATCCGGCATCGAAACATTGTGAAGTTATACGGGTATTGTTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTGGAGAAAGGCAGTGTGGACAAGATTTTGAAAGACAATGACCAAGCAATTAAGTTGAATTGGAATAGGAGGGTAAATGCCATTAAAGGTGTAGCTAATGCTTTATGCTATATGCATCACAATTGCTCACCTTCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATTTGGAATATGTGGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTAATCCCGATTCTTCCAATTGGACCTGTTTTGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAGTGTGATGTGTATAGTTTTGGGATATTAACCTTGGAAATACTTTTTGGAAAGCATCCTGGAGACATTGTATCAACTGCTTTGCATTCAAGTGGTATATATGTAACAGTCGACGCTATGTCATTGATTGATAAGTTGGATCAACGCCTCCCGCATCCTACTAAAGATATCAAGAATGAGGTGTTATCAATTTTAAGGATTGCAATTCATTGCTTAAGTGAGAGAACACATGATCGCCCTACAATGGGGCAAGTTTGCAAGGAGATTGTAATGTCAAAGTCATCTTAA 2772 0.3716 MEDLYFVYKYLPWHYNNKSLSLIRNFLCVQISKMFQKMKPLPLLCVRLFFYVFVIATSPHATTKIQGSEVDVLLKWKASFDNHSRALLSSWIGNDPCSSWEGITCCDDSKSICKLNLTNIGLKGMLQSLNFSSLPKIRILVLKNNSFYGVVPHHIGVMSNLETLDLSLNRLSGNIPSEVGKLNSLTTIQLSGNNLSGPIPSSIGNLIKLTSILLDDNKLCGHIPSTIGNLTKLTKLSLISNALTGNIPTEMNRLTNFEILQLCNNNFTGHLPHNICVSGKLTRFSTSNNQFIGLVPKSLKNCSSLKRVRLQQNQLTANITDSFGVYPNLEYMELSDNNFYGHLSPNWGKCKNLTSLKVFNNNISGSIPPELAEATNLTILDLSSNQLTGEIPKELGNLSSLIQLLISSNHLVGEVPEQIALLHKITILELATNNFSGFIPEQLGRLPNLLDLNLSQNKFEGDIPAEFGQLKIIENLDLSENVLNGTIPTMLGELNRLETLNLSHNNFSGTIPLTYGEMSSLTTIDISYNQFEGPIPNIPAFKNAPIEALRNNKGLCGNSGLEPCSTLGGNFHSHKTKHILVVVLPITLGTLLSALFLYGLSCLLCRTSSTKEYKTAGEFQTENLFAIWSFDGKLVYENIVEATEEFDNKHLIGIGGHGSVYKAEFPTGQVVAVKKLHSLQNGETSNLKAFASEIQALTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDKILKDNDQAIKLNWNRRVNAIKGVANALCYMHHNCSPSIVHRDISSKNVVLDLEYVAHVSDFGTAKFLNPDSSNWTCFVGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVSTALHSSGIYVTVDAMSLIDKLDQRLPHPTKDIKNEVLSILRIAIHCLSERTHDRPTMGQVCKEIVMSKSS* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1262 923 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 140 923 - -
Mtr1g1262 923 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 45 171 - -
Mtr1g1262 923 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 140 923 - -
Mtr1g1262 923 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 45 171 - -
Mtr1g1262 923 SUPERFAMILY L domain-like 111 273 - -
Mtr1g1262 923 Pfam Leucine Rich repeat 375 390 IPR001611 GO:0005515
Mtr1g1262 923 PRINTS Leucine-rich repeat signature 377 390 - -
Mtr1g1262 923 PRINTS Leucine-rich repeat signature 494 507 - -
Mtr1g1262 923 Gene3D Ribonuclease Inhibitor 424 566 IPR032675 -
Mtr1g1262 923 Gene3D Ribonuclease Inhibitor 320 423 IPR032675 -
Mtr1g1262 923 Gene3D Ribonuclease Inhibitor 225 319 IPR032675 -
Mtr1g1262 923 Gene3D Ribonuclease Inhibitor 66 224 IPR032675 -
Mtr1g1262 923 ProSitePatterns Tyrosine protein kinases specific active-site signature. 770 782 IPR008266 GO:0004672|GO:0006468
Mtr1g1262 923 ProSiteProfiles Leucine-rich repeat profile. 376 399 IPR001611 GO:0005515
Mtr1g1262 923 Pfam Protein kinase domain 647 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1262 923 Pfam Leucine rich repeat 135 195 IPR001611 GO:0005515
Mtr1g1262 923 Pfam Leucine rich repeat 425 483 IPR001611 GO:0005515
Mtr1g1262 923 SMART LRR_typ_2 158 182 IPR003591 -
Mtr1g1262 923 SMART LRR_typ_2 494 518 IPR003591 -
Mtr1g1262 923 SMART LRR_typ_2 375 398 IPR003591 -
Mtr1g1262 923 SMART LRR_typ_2 206 230 IPR003591 -
Mtr1g1262 923 SMART LRR_typ_2 254 278 IPR003591 -
Mtr1g1262 923 SMART LRR_typ_2 446 470 IPR003591 -
Mtr1g1262 923 ProSiteProfiles Leucine-rich repeat profile. 160 182 IPR001611 GO:0005515
Mtr1g1262 923 ProSitePatterns Protein kinases ATP-binding region signature. 652 675 IPR017441 GO:0005524
Mtr1g1262 923 SUPERFAMILY Protein kinase-like (PK-like) 630 916 IPR011009 -
Mtr1g1262 923 Gene3D Transferase(Phosphotransferase) domain 1 725 923 - -
Mtr1g1262 923 ProSiteProfiles Protein kinase domain profile. 646 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1262 923 SUPERFAMILY RNI-like 222 534 - -
Mtr1g1262 923 Gene3D Phosphorylase Kinase; domain 1 606 724 - -
Mtr1g1262 923 Pfam Leucine rich repeat N-terminal domain 68 105 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1262 Mtr-Chr1 14951350 14954732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1262 131 818 Receptor kinase-like Gene Family AT4G08850 45.115 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1262 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1262 - - mtr:MTR_0365s0020 1775.76