Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1256 ATGCTTCAGAGCATGAAGCTGTTTCCATTATCATGTCTTCTTTGGTTCTTTTGTATGTTTGTAATGGCAACATCACCTCATGCTTCGTCAAAAACGCAAAGCAGCGAGGCAAATGCTTTATTGAAATGGAAAGCAAGCTTTGACAACCAAAGCAAGTCATTGCTCTCTTCATGGATTGGTAATAAGCCTTGCAATTGGGTGGGAATCACATGTGATGGCAAGTCAAAATCTATCTACAAGATACATCTTGCAAGTATTGGACTAAAAGGTACACTTCAAAATCTCAATATCTCATCACTTCCAAAAATCCATAGCTTAGTTTTAAGAAACAACTCATTCTTTGGAGTTGTTCCACATCATATTGGTGTAATGTCCAATCTAGAAACTCTTGATTTGTCACTAAATGAACTCTCTGGTAGCGTTCCCAATACCATTGGTAATTTCTCCAAACTATCCTATCTTGATCTCAGCTTTAATTATCTCAGTGGGTCTATCTCTATTTCTTTAGGAAAGTTGGCCAAAATAACAAATCTCAAGTTACATTCCAATCAACTTTTCGGCCACATTCCTCGTGAAATAGGAAATTTAGTCAACCTCCAGAGACTATATCTTGGAAATAACAGCCTTTCTGGCTTCATTCCTCGAGAAATTGGATTTCTAAAACAACTCGGTGAACTTGACTTGTCTATGAATCATCTCTCCGGTGCAATCCCTTCTACAATTGGAAATTTGAGCAATTTATATTATCTTTACCTTTATTCAAACCATCTCATTGGTAGCATTCCGAATGAAGTTGGAAAACTTTATTCCCTTTCCACAATCCAGTTGTTAGACAACAACCTCTCAGGGTCAATCCCTCCATCCATGAGTAACTTGGTCAATTTGGATTCTATTCTCCTTCATAGAAATAAACTCTCGGGACCAATTCCTACCACTATCGGAAATTTGACAAAACTCACAATGTTATCTCTTTTCTCAAATGCTCTCACCGGACAAATTCCACCTTCCATATATAACTTGGTCAATTTGGATACTATTGTCCTTCATACAAATACACTATCTGGACCTATTCCTTTCACTATAGGAAATTTGACAAAACTCACTGAGTTAACTCTTTTCTCAAATGCTCTCACCGGACAAATTCCACATTCCATAGGTAACTTGGTCAATTTGGATTCTATTATCCTTCATATAAATAAACTCTCGGGACCAATTCCTTGCACTATAAAAAATTTGACAAAACTCACAGTGTTATCTCTTTTCTCAAATGCTCTCACCGGACAAATTCCACCTTCCATTGGTAACTTGGTCAACTTGGATTCTATTACCATTTCAACAAATAAACCCTCTGGACCAATTCCTCCCACTATCGGAAATTTGACAAAACTCAGTAGCTTACCTCCTTTCTCAAATGCATTAAGTGGCAACATTCCAACCAGAATGAATAGAGTTACCAATTTAGAAGTTTTGTTGTTAGGTGATAATAATTTCACAGGTCAATTACCGCACAACATTTGTGTTAGTGGAAAGTTATATTGGTTCACTGCATCCAATAATCATTTCACAGGATTAGTTCCAATGAGTTTGAAGAATTGCTCCAGCCTTATTAGAGTTAGGCTTCAAAAAAATCAATTAACTGGAAATATAACAGATGGTTTTGGTGTTTATCCACATTTGGTCTACATGGAATTAAGTGATAATAATTTTTATGGCCATATATCACCAAATTGGGGTAAGTGCAAGAAACTCACAAGTCTTCAAATCTCCAACAATAATTTAACTGGAAGCATACCGCAAGAACTAGGTGGAGCAACACAATTACAAGAACTTAATCTGTCTTCAAACCATCTTACTGGAAAAATTCCAAAGGAGCTAGGAAACTTATCTTTGTTAATCAAACTCTCGATAAATAACAATAATCTTTTGGGAGAAGTTCCTGTACAAATTGCATCACTGCAGGCACTAACTGCCTTGGAGCTTGAAAAAAATAATTTAAGTGGCTTCATCCCTAGAAGACTTGGAAGGTTGTCTGAGTTAATACATTTGAATTTGAGCCAAAATAGGTTTGAAGGAAACATTCCCATTGAGTTTGGCCAATTAGAAGTTATTGAAGATCTTGACCTTAGTGGAAATTTTTTGAACGGAACCATACCATCAATGCTTGGACAGTTAAATCACATACAAACATTGAATCTTTCACATAATAATCTTTCTGGAACCATTCCTTTGAGCTACGGTAAGATGTTAAGCTTGACAATTGTTGATATATCATACAACCAATTGGAGGGTCCGATTCCTAACATTCCAGCCTTCCTAAAAGCTCCAATTGAAGCACTGAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGTCTAGAGCCTTGCTCAACATCAGGTGGAAACTTTCATAACTTTCATAGTCATAAGACTAACAAAATTTTGGATCTAGTTTTACCCCTCACTCTTGGAACTCTATTGTTAGCATTATTTGTTTATGGGTTCTCATACCTTTTCTACCACACTTCAAGAAAAAAAGAATACAAGCCTACAGAAGAATTTCAAACTGAAAATCTCTTTGCAACATGGAGCTTTGATGGAAAAATGGTATATGAGAACATAATCGAAGCCACAGAAGATTTTGACAACAAGCATCTCATTGGGGTTGGAGGACATGGAAATGTTTACAAAGCAGAGTTGCCTTCAGGTCAAGTTGTAGCTGTGAAGAAACTTCATTTATTAGAACATGAAGAAATGTCTAATATGAAAGCATTCAATAATGAGATCCATGCTTTGACAGAAATTCGACATCGCAACATTGTGAAGTTATACGGCTTTTGTTCACATCGACTACACTCATTTTTGGTTTATGAATTTTTGGAGAAGGGTAGCATGTACAACATTTTGAAGGACAATGAACAAGCTGCTGAATTTGATTGGAATAAGAGGGTGAATATCATTAAAGATATAGCTAATGCCTTATTCTATCTGCATCATGATTGTTCCCCTCCTATTGTTCATCGAGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTCTCAGACTTCGGAACATCCAAGTTCCTAAATCCCAATTCATCCAACATGACTTCTTTTGCAGGCACCTTTGGATATGCAGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGGATATTAACCTTGGAAATACTTTATGGAAAGCACCCTGGAGATGTTGTAACTTCTTTGTGGCAGCAAGCTTCACAAAGTGTTATGGACGTGACACTTGATCCTATGCCATTGATAGATAAATTGGACCAACGTCTCCCTCATCCCACAAATACCATTGTTCAAGAGGTGTCTTCTGTGCTAAGGATTGCAGTTGCTTGCATAACAAAAAGCCCGTGTTCTCGCCCTACCATGGAGCAGGTCTGCAAGCAGCTTGTAATGTCATAG 3474 0.3693 MLQSMKLFPLSCLLWFFCMFVMATSPHASSKTQSSEANALLKWKASFDNQSKSLLSSWIGNKPCNWVGITCDGKSKSIYKIHLASIGLKGTLQNLNISSLPKIHSLVLRNNSFFGVVPHHIGVMSNLETLDLSLNELSGSVPNTIGNFSKLSYLDLSFNYLSGSISISLGKLAKITNLKLHSNQLFGHIPREIGNLVNLQRLYLGNNSLSGFIPREIGFLKQLGELDLSMNHLSGAIPSTIGNLSNLYYLYLYSNHLIGSIPNEVGKLYSLSTIQLLDNNLSGSIPPSMSNLVNLDSILLHRNKLSGPIPTTIGNLTKLTMLSLFSNALTGQIPPSIYNLVNLDTIVLHTNTLSGPIPFTIGNLTKLTELTLFSNALTGQIPHSIGNLVNLDSIILHINKLSGPIPCTIKNLTKLTVLSLFSNALTGQIPPSIGNLVNLDSITISTNKPSGPIPPTIGNLTKLSSLPPFSNALSGNIPTRMNRVTNLEVLLLGDNNFTGQLPHNICVSGKLYWFTASNNHFTGLVPMSLKNCSSLIRVRLQKNQLTGNITDGFGVYPHLVYMELSDNNFYGHISPNWGKCKKLTSLQISNNNLTGSIPQELGGATQLQELNLSSNHLTGKIPKELGNLSLLIKLSINNNNLLGEVPVQIASLQALTALELEKNNLSGFIPRRLGRLSELIHLNLSQNRFEGNIPIEFGQLEVIEDLDLSGNFLNGTIPSMLGQLNHIQTLNLSHNNLSGTIPLSYGKMLSLTIVDISYNQLEGPIPNIPAFLKAPIEALRNNKGLCGNVSGLEPCSTSGGNFHNFHSHKTNKILDLVLPLTLGTLLLALFVYGFSYLFYHTSRKKEYKPTEEFQTENLFATWSFDGKMVYENIIEATEDFDNKHLIGVGGHGNVYKAELPSGQVVAVKKLHLLEHEEMSNMKAFNNEIHALTEIRHRNIVKLYGFCSHRLHSFLVYEFLEKGSMYNILKDNEQAAEFDWNKRVNIIKDIANALFYLHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILYGKHPGDVVTSLWQQASQSVMDVTLDPMPLIDKLDQRLPHPTNTIVQEVSSVLRIAVACITKSPCSRPTMEQVCKQLVMS* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1256 1157 SUPERFAMILY L domain-like 76 192 - -
Mtr1g1256 1157 ProSiteProfiles Protein kinase domain profile. 880 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1256 1157 ProSitePatterns Protein kinases ATP-binding region signature. 886 909 IPR017441 GO:0005524
Mtr1g1256 1157 Gene3D Ribonuclease Inhibitor 469 798 IPR032675 -
Mtr1g1256 1157 Gene3D Ribonuclease Inhibitor 196 361 IPR032675 -
Mtr1g1256 1157 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Mtr1g1256 1157 Gene3D Ribonuclease Inhibitor 367 467 IPR032675 -
Mtr1g1256 1157 SMART LRR_typ_2 484 508 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 700 724 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 652 676 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 412 436 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 605 628 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 196 220 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 364 388 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 124 147 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 316 340 IPR003591 -
Mtr1g1256 1157 SMART LRR_typ_2 244 268 IPR003591 -
Mtr1g1256 1157 SMART LRR_sd22_2 124 156 - -
Mtr1g1256 1157 SMART LRR_sd22_2 316 342 - -
Mtr1g1256 1157 SMART LRR_sd22_2 364 390 - -
Mtr1g1256 1157 SMART LRR_sd22_2 412 438 - -
Mtr1g1256 1157 SMART LRR_sd22_2 220 246 - -
Mtr1g1256 1157 SMART LRR_sd22_2 196 211 - -
Mtr1g1256 1157 Pfam Protein kinase domain 881 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1256 1157 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 151 280 - -
Mtr1g1256 1157 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 346 1157 - -
Mtr1g1256 1157 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 166 - -
Mtr1g1256 1157 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 248 358 - -
Mtr1g1256 1157 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Mtr1g1256 1157 SUPERFAMILY Protein kinase-like (PK-like) 862 1154 IPR011009 -
Mtr1g1256 1157 SUPERFAMILY L domain-like 171 406 - -
Mtr1g1256 1157 SUPERFAMILY L domain-like 386 498 - -
Mtr1g1256 1157 Gene3D Transferase(Phosphotransferase) domain 1 959 1157 - -
Mtr1g1256 1157 Pfam Leucine rich repeat 101 161 IPR001611 GO:0005515
Mtr1g1256 1157 Pfam Leucine rich repeat 175 233 IPR001611 GO:0005515
Mtr1g1256 1157 Pfam Leucine rich repeat 557 617 IPR001611 GO:0005515
Mtr1g1256 1157 SUPERFAMILY L domain-like 512 787 - -
Mtr1g1256 1157 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1004 1016 IPR008266 GO:0004672|GO:0006468
Mtr1g1256 1157 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 166 - -
Mtr1g1256 1157 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 346 1157 - -
Mtr1g1256 1157 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 248 358 - -
Mtr1g1256 1157 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 151 280 - -
Mtr1g1256 1157 Gene3D Phosphorylase Kinase; domain 1 839 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1256 Mtr-Chr1 14897463 14901269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1256 36 692 Receptor kinase-like Gene Family AT4G08850 36.254 2.24e-109 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1256 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1256 - - mtr:MTR_1g040615 1582.77