Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1253 ATGTCGTGTCTTATTTTGTTCTTCTATGTGTTTGTAATTGCAACATCACCTCATGCTGCAACAATAATCCAAGGTAGCGAGGCTGATGCTCTGTTGAAGTGGAAAGCAAGCCTTGACAACAACAGTAGGGCATTGCTTTCTTCATGGAATGGTAATAATCCTTGTAGTTGGGAAGGAATCACATGTGATAATGATTCAAAATCCATCAACAAGGTAAATCTCACTGATATTGGACTAAAAGGTACGCTTCAAAGTCTCAATTTATCATCACTTCCAAAAATCCACACTCTTGATTTGTCACTAAATAATCTCTCTGGTAACATTCCCAAAAGTGTTGGTAATTTGTCCAAACTATCTTATCTTGATCTCAGTTTCAATTATCTCATTGGGATTATTCCTTTTGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGGGTAGTAACCATGATTTAAGTGGATCAATCCCTCAAGAAATTGGTAGATTGAGGAATTTGACAATGCTTGATATTTCTTCCTGCAATCTCATAGGGACAATACCAACCTCGATAGAAAAGATAACCAACATGTCACATCTTGATGTTGCAAAAAACAGCCTTTCTGGCAACATTCCTGACAGAATTTGGAAAATGGACCTAAAGTATTTGTCATTTTCAACTAATAAATTTAATGGTTCCATTTCACAAAATATTTTCAAGGCACGAAACCTAGAGTTACTACATTTGCAAAAAAGTGGTCTTTCAGGTTTCATGCCTAAGGAATTTAAGATGTTGGGTAATTTGATAGATCTTGATATTAGTGAATGCGATCTCACTGGGTCTATCCCTATTTCTATAGGAATGTTGGCCAATATATCAAATCTTTTTTTATATTCCAATCAACTTATTGGCCAAATTCCTCGTGAAATTGGGAATTTGGTCAACCTCCAAAGACTATATCTTGGAAATAACAACCTTTCTGGCTTCATTCCTCACGAAATGGGATTTCTAAAACAACTTCGTGAACTTGATTTTTCTATTAACCATCTCTCAGGACCAATCCCGTCTACAATTGGAAACTTAAGCAATTTAGGATTATTTTACCTTTATGCAAACCATCTCATTGGTAGCATTCCTAATGAAGTTGGGAAACTTCATTCTCTTAAAACAATCCAATTGCTTGACAATAACCTCTCTGGGCCAATCCCACCATCCATAGGTAATTTGGTTAATTTGAATTCTATTATCCTTTTTCAAAATAACCTCTCTGGACCAATTCCTTCAACTATCGGAAATTTGACGAAACTCACTATATTAAATCTTTTCTCAAATGAGTTAGGTGGAAATATTCCAAAAGAAATGAATAGGATAACCAATTTGAAAATTTTGCAATTATCTGATAATAATTTCATAGGCCATTTACCTCACAACATTTGTGTTGGTGGAATGTTGACAAATTTCACTGCTAGTAATAACCAATTCACAGGGCCAATTCCAAAGAGTTTAAAGAATTGCTCCAGCCTTATTAGAGTTAGGCTTCAAAAAAATCAATTAACTGGAAATATAACAGATGGTTTTGGTGTTTATCCACATTTGGACTACATGGAATTGAGTGAAAATAATTTGTATGGCCATCTATCACCAAATTGGGGAAAGTGCAAGAGTCTCACAAGCCTTAAAATCTCCAATAACAATTTAACAGGAAATATACCACAAGAATTGGCTGAGACAATTAATTTACATGAACTTAACTTGTCATCAAACCATCTTACTGGAAAAATTCCAAAGGATCTAGGAAACTTGTCTTTGTTGATCAAACTCTCGATAAGTAACAATCATCTTTCTGGAGAGGTTCCTATACAAATTGCATCATTGCAAGCACTAACTACCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCTAGAAGACTTGGAAGGTTGTCTGAGTTAATACATTTGAATTTGAGCCAAAATAAGTTTGAAGGAAACATTCCCGTTGAGTTTGGCCGATTAAATGTTATTGAAGATCTTGATCTCAGTGGAAATTTTATGAATGGAACGATACCTTCAATGTTTGGAGTGTTAAATCATTTAGAAACATTGAATCTCTCACATAATAATCTGTCTGGTACGATCCCCTTTAGCTCTGGTGATATGTTAAGCTTGACAATTATTGATATATCATACAACCAATTGGAGGGTCCGATTCCAAGCATTCCAGCCTTCCAACAAGCTCCAATTGAAGCACTGAGAAACAACAAAGACTTGTGTGGTAATGCATCTAGCCTAAAGCCTTGTCCAACATCCAATAGGAACCATAATACTCATAAGACTAACAAAAAATTGGTGGTAATTTTACCCATCACTCTAGGCATTTTTTTGTTAGCATTATTTGGTTATGGGATCTCCTATTATCTATTTCGAACTTCGAACACAAAAGAATCCAAGGTTGCAGAAGAATCACACACTGAAAATCTATTTTCAATATGGAGTTTTGATGGAAAAATGGTGTATGAAAATATTGTAGAAGCCACAGAAGAGTTTGACAACAAACATCTCATCGGGGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGACAGGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAATGTCCAATTTGAAAGCTTTTGCAAGTGAGATAAAAGCTTTAACAGAAAGCCGACATCGAAACATTGTGAAGTTATACGGGTATTGTTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTGGAGAAGGGCAGTCTGGATAAGATTTTGAAAGACGATGAGCAAGCCACTATGTTTGATTGGAATAAGAGGGTGAAATCCATTAAAGATGTAGCTAATGCTTTATACTACATGCATCATGATCGCTCACCTGCAATTGTTCATCGCGATATATCGAGTAAGAATATTGTTTTGGATTTGGAATATGTGGCTCATGTCTCGGATTTCGGAACAGCTAAGTTTCTTAATCCCGATGCTTCCAATTGGACCTCTAACTTTGTAGGCACGTTTGGATACACTGCTCCAGAACTTGCATATACAATGGAAGTAAATGAGAAGTGTGATGTGTATAGTTTTGGAGTATTAAGCCTGGAAATACTTCTTGGAAAACATCCTGGAGACATTGTATCTAAGTTAATGCAATCAAGTACTGCAGGCCAAACAATTGATGCTATGTTTTTGACTGATATGTTGGATCAACGCCTCCCTTTTCCTACAAATGATATCAAGAAAGAGGTGGTATCAATTATAAGGATTGCATTTCATTGCTTAACTGAGAGCCCACATAGTCGCCCTACAATGGAGCAAGTTTGCAAGGAGATTGCAATATCAAAGTCATCTTATCTTCCAGGGGTTAATCATGTACATGATATGGAAAGGGGTGATTTATCTAAGGAATAA 3426 0.3593 MSCLILFFYVFVIATSPHAATIIQGSEADALLKWKASLDNNSRALLSSWNGNNPCSWEGITCDNDSKSINKVNLTDIGLKGTLQSLNLSSLPKIHTLDLSLNNLSGNIPKSVGNLSKLSYLDLSFNYLIGIIPFEITQLVGLYVLSMGSNHDLSGSIPQEIGRLRNLTMLDISSCNLIGTIPTSIEKITNMSHLDVAKNSLSGNIPDRIWKMDLKYLSFSTNKFNGSISQNIFKARNLELLHLQKSGLSGFMPKEFKMLGNLIDLDISECDLTGSIPISIGMLANISNLFLYSNQLIGQIPREIGNLVNLQRLYLGNNNLSGFIPHEMGFLKQLRELDFSINHLSGPIPSTIGNLSNLGLFYLYANHLIGSIPNEVGKLHSLKTIQLLDNNLSGPIPPSIGNLVNLNSIILFQNNLSGPIPSTIGNLTKLTILNLFSNELGGNIPKEMNRITNLKILQLSDNNFIGHLPHNICVGGMLTNFTASNNQFTGPIPKSLKNCSSLIRVRLQKNQLTGNITDGFGVYPHLDYMELSENNLYGHLSPNWGKCKSLTSLKISNNNLTGNIPQELAETINLHELNLSSNHLTGKIPKDLGNLSLLIKLSISNNHLSGEVPIQIASLQALTTLELATNNLSGFIPRRLGRLSELIHLNLSQNKFEGNIPVEFGRLNVIEDLDLSGNFMNGTIPSMFGVLNHLETLNLSHNNLSGTIPFSSGDMLSLTIIDISYNQLEGPIPSIPAFQQAPIEALRNNKDLCGNASSLKPCPTSNRNHNTHKTNKKLVVILPITLGIFLLALFGYGISYYLFRTSNTKESKVAEESHTENLFSIWSFDGKMVYENIVEATEEFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLQNGEMSNLKAFASEIKALTESRHRNIVKLYGYCSHPLHSFLVYEFLEKGSLDKILKDDEQATMFDWNKRVKSIKDVANALYYMHHDRSPAIVHRDISSKNIVLDLEYVAHVSDFGTAKFLNPDASNWTSNFVGTFGYTAPELAYTMEVNEKCDVYSFGVLSLEILLGKHPGDIVSKLMQSSTAGQTIDAMFLTDMLDQRLPFPTNDIKKEVVSIIRIAFHCLTESPHSRPTMEQVCKEIAISKSSYLPGVNHVHDMERGDLSKE* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1253 1141 Gene3D Transferase(Phosphotransferase) domain 1 923 1125 - -
Mtr1g1253 1141 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Mtr1g1253 1141 SUPERFAMILY Protein kinase-like (PK-like) 824 1115 IPR011009 -
Mtr1g1253 1141 ProSiteProfiles Protein kinase domain profile. 844 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1253 1141 ProSitePatterns Tyrosine protein kinases specific active-site signature. 968 980 IPR008266 GO:0004672|GO:0006468
Mtr1g1253 1141 Pfam Protein kinase domain 845 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1253 1141 SMART LRR_typ_2 619 643 IPR003591 -
Mtr1g1253 1141 SMART LRR_typ_2 451 475 IPR003591 -
Mtr1g1253 1141 SMART LRR_typ_2 307 331 IPR003591 -
Mtr1g1253 1141 SMART LRR_typ_2 115 139 IPR003591 -
Mtr1g1253 1141 SMART LRR_typ_2 691 715 IPR003591 -
Mtr1g1253 1141 SMART LRR_typ_2 355 379 IPR003591 -
Mtr1g1253 1141 Gene3D Ribonuclease Inhibitor 17 86 IPR032675 -
Mtr1g1253 1141 Gene3D Ribonuclease Inhibitor 453 766 IPR032675 -
Mtr1g1253 1141 SUPERFAMILY L domain-like 27 297 - -
Mtr1g1253 1141 SUPERFAMILY L domain-like 479 754 - -
Mtr1g1253 1141 SUPERFAMILY L domain-like 222 516 - -
Mtr1g1253 1141 ProSitePatterns Protein kinases ATP-binding region signature. 850 873 IPR017441 GO:0005524
Mtr1g1253 1141 Gene3D Phosphorylase Kinase; domain 1 804 922 - -
Mtr1g1253 1141 Gene3D Ribonuclease Inhibitor 349 449 IPR032675 -
Mtr1g1253 1141 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 150 270 - -
Mtr1g1253 1141 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 322 1122 - -
Mtr1g1253 1141 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 167 - -
Mtr1g1253 1141 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 262 358 - -
Mtr1g1253 1141 ProSiteProfiles Leucine-rich repeat profile. 573 596 IPR001611 GO:0005515
Mtr1g1253 1141 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 262 358 - -
Mtr1g1253 1141 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 322 1122 - -
Mtr1g1253 1141 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 150 270 - -
Mtr1g1253 1141 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 167 - -
Mtr1g1253 1141 Pfam Leucine rich repeat 621 678 IPR001611 GO:0005515
Mtr1g1253 1141 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515
Mtr1g1253 1141 Pfam Leucine Rich Repeat 309 327 IPR001611 GO:0005515
Mtr1g1253 1141 Pfam Leucine Rich Repeat 573 595 IPR001611 GO:0005515
Mtr1g1253 1141 Gene3D Ribonuclease Inhibitor 87 348 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1253 Mtr-Chr1 14855638 14859382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1253 5 661 Receptor kinase-like Gene Family AT4G08850 35.045 7.40e-98 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1253 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1253 - - mtr:MTR_1g040615 1405.58