Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1250 ATGCTTCATAGAATGAAGCAGTTACAACCAAAGCAGTGTCTTCTTGTGTTCTTCTATGTGTTTGTTATGGCCACATCATCTCATACTGCAACAAAAATCAAAAGCAGTGAGACAGATGCTCTGTTGAAGTGGAAAGCAAGCTTTGACAACCAAAGCAAGACACTACTCTCTTCATGGATTGGTAATAATCCTTGTAGTAGTTGGGAAGGAATCACATGTGATGATGAATCAAAATCAATCTACAAGGTAAATCTCACCAATATTGGACTAAAAGGTACGCTTCAAACTCTCAATTTCTCATCACTTCCAAAAATCCAAGAATTAGTTTTGAGAAACAACTCCTTCTATGGAGTTATTCCATATTTTGGTGTGAAGTCCAATCTAGATACTATTGAGTTGTCATATAATGAACTCTCTGGTCATATTCCCAGTACCATTGGTTTTCTGTCCAAACTCTCTTTTCTTAGTCTTGGTGTTAATAATCTCAATGGTATCATTCCTAATACCATTGCTAATCTATCCAAACTCTCATATCTTGATCTTAGTTATAATCATCTCTCTGGGATTGTTCCATCTGAGATAACCCAATTGGTTGGTATTAATAAGTTGTATATAGGTGATAACGGTTTTAGTGGTCCCTTCCCTCAAGAAGTAGGTAGACTGAGGAATCTAACAGAACTTGATTTTAGCACTTGCAATTTCACAGGAACTATACCAAAATCAATAGTAATGTTGACCAATATATCAACTCTTAATTTCTATAACAACCGAATTTCTGGCCACATTCCTCGTGGTATTGGAAAGTTGGTAAATCTCAAGAAACTATATATTGGAAATAATAGTCTTTCTGGCTCCATTCCTGAAGAAATTGGATTTCTAAAACAAATTGGTGAACTTGATATCTCTCAGAACTCTCTCACTGGTACAATCCCTTCTACAATTGGAAACATGAGCAGTTTATTTTGGTTTTACCTGTATAGAAACTATCTCATTGGTAGGATTCCTAGTGAAATTGGGATGTTGGTCAATCTCAAGAAACTATATATTAGAAATAATAATCTTTCTGGCTCCATTCCTCGAGAAATTGGATTTCTAAAACAACTTGCTGAAGTTGATATCTCTCAAAACTCTCTCACTGGTACAATCCCTTCTACAATTGGAAACATGAGCAGTTTATTTTGGCTTTACCTGAATAGCAACTATCTCATTGGTAGGATTCCTAGTGAAATCGGAAAGCTCTCTTCCCTTTCAGATTTCGTGTTGAACCATAACAACCTCTTGGGGCAAATTCCTTCTACTATCGGAAATTTGACAAAACTTAATTCGTTATATCTTTACTCAAATGCCCTCACTGGAAATATTCCGATAGAAATGAATAACCTTGGCAATTTGAAAAGTCTGCAATTATCAGATAATAATTTCACAGGTCATTTACCTCACAACATATGTGCTGGTGGAAAGTTAACTTGGTTCTCCGCCAGCAATAACCAATTCACAGGCCCAATTCCAAAGAGTTTGAAGAACTGCTCTAGCCTTTATAGAGTAAGGCTTCAACAAAATCAACTAACTGACAATATAACTGATGCCTTTGGCGTGCATCCAAAATTGGACTACATGGAATTGAGTGATAATAATTTGTATGGCCATCTATCACCGAATTGGGGAAAATGCATGAATCTCACATGCCTTAAAATCTTCAATAACAATTTAACAGGAAGCATACCGCCAGAACTAGGCCGAGCAACAAATTTACATGAACTAAACCTGTCTTCAAACCATCTTACGGGAAAAATTCCAAAGGAGCTAGAAAGCTTATCTTTGTTGATCCAACTCTCGGTAAGTAACAATCATCTTTCAGGAGAAGTTCCTGCACAAGTTGCATCATTGCAAAAACTAGATACCTTGGAGCTTTCAACAAATAATTTAAGTGGTTCAATCCCAAAACAACTTGGAAGTTTGTCAATGTTATTACACTTGAATTTAAGCAAAAATATGTTTGAAGGAAACATTCCTGTCGAGTTTGGCCAATTAAATGTTCTTGAAGATCTTGATCTTAGTGAGAATTTTTTGAACGGAACCATTCCAGCAATGTTTGGACAGTTAAATCACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTACCATTCTCTTCAGCTCAGTTGATATGTTAAGCTTGACAACTGTAGATATATCGTACAACCAGTTGGAGGGTCCGATTCCAAGCATTCCAGCCTTCCAACAGGCTCCAATTGAAGCACTGAGAAACAACAAAGACTTGTGTGGTAATGCTTCTAGCCTAAAGCCTTGTCCAACATCCAATAGGAACCCTAATACTCATAAGACTAACAAAAAATTGGTGGTAATTTTACCCATCACTCTAGGCATTTTTTTGTTAGCATTATTTGGTTATGGGATCTCCTATTATCTATTTCGAACTTCGAACAGAAAAGAATCCAAGGTTGCAGAAGAATCACACACTGAAAATCTATTTTCAATATGGAGTTTTGATGGAAAAATTGTGTATGAAAACATTGTTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGGGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAATGTCCAATCTGAAAGCATTTGCAAGTGAGATCCAAGCTTTAACAGAAATCCGACATCGAAACATTGTGAAGTTATGCGGTTATTGTTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTGGAAAAGGGTAGCGTGGACAAGATTTTGAAAGAAGATGAGCAAGCTACTATGTTTGACTGGAATAGGAGGGTGAATGTCATTAAGGATGTAGCTAATGCACTATACTACATGCATCATGATCGCTCACCATCAATTGTTCATCGCGATATATCCAGTAAGAATATTGTTTTGGATTTGGAATATGTGGCTCATGTCTCAGATTTCGGAACAGCTAAGTTTCTCAATCCCAATGCTTCCAATTGGACCTCTAATTTTGTAGGCACCTTTGGATACACTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAGTGTGATGTGTATAGTTTTGGAGTATTAACCTTGGAAATGCTTCTTGGAAAACATCCTGGAGACATTGTATCTACAATGTTGCAATCAAGTTCTGTAGGCCAAACAATTGATGCTGTTTTGTTGACTGATATGTTGGATCAACGCCTCCTTTATCCTACTAATGATATCAAGAAAGAGGTGGTATCAATTATAAGGATTGCATTTCATTGCTTAACTGAGAGCCCACATAGTCGCCCTACAATGGAGCAAGTTTGCAAGGAGATCGCAATATCAAAGTCATCTTCCAGGTCATGTACATGA 3414 0.3691 MLHRMKQLQPKQCLLVFFYVFVMATSSHTATKIKSSETDALLKWKASFDNQSKTLLSSWIGNNPCSSWEGITCDDESKSIYKVNLTNIGLKGTLQTLNFSSLPKIQELVLRNNSFYGVIPYFGVKSNLDTIELSYNELSGHIPSTIGFLSKLSFLSLGVNNLNGIIPNTIANLSKLSYLDLSYNHLSGIVPSEITQLVGINKLYIGDNGFSGPFPQEVGRLRNLTELDFSTCNFTGTIPKSIVMLTNISTLNFYNNRISGHIPRGIGKLVNLKKLYIGNNSLSGSIPEEIGFLKQIGELDISQNSLTGTIPSTIGNMSSLFWFYLYRNYLIGRIPSEIGMLVNLKKLYIRNNNLSGSIPREIGFLKQLAEVDISQNSLTGTIPSTIGNMSSLFWLYLNSNYLIGRIPSEIGKLSSLSDFVLNHNNLLGQIPSTIGNLTKLNSLYLYSNALTGNIPIEMNNLGNLKSLQLSDNNFTGHLPHNICAGGKLTWFSASNNQFTGPIPKSLKNCSSLYRVRLQQNQLTDNITDAFGVHPKLDYMELSDNNLYGHLSPNWGKCMNLTCLKIFNNNLTGSIPPELGRATNLHELNLSSNHLTGKIPKELESLSLLIQLSVSNNHLSGEVPAQVASLQKLDTLELSTNNLSGSIPKQLGSLSMLLHLNLSKNMFEGNIPVEFGQLNVLEDLDLSENFLNGTIPAMFGQLNHLETLNLSHNNLSGTILFSSVDMLSLTTVDISYNQLEGPIPSIPAFQQAPIEALRNNKDLCGNASSLKPCPTSNRNPNTHKTNKKLVVILPITLGIFLLALFGYGISYYLFRTSNRKESKVAEESHTENLFSIWSFDGKIVYENIVEATEEFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLQNGEMSNLKAFASEIQALTEIRHRNIVKLCGYCSHPLHSFLVYEFLEKGSVDKILKEDEQATMFDWNRRVNVIKDVANALYYMHHDRSPSIVHRDISSKNIVLDLEYVAHVSDFGTAKFLNPNASNWTSNFVGTFGYTAPELAYTMEVNEKCDVYSFGVLTLEMLLGKHPGDIVSTMLQSSSVGQTIDAVLLTDMLDQRLLYPTNDIKKEVVSIIRIAFHCLTESPHSRPTMEQVCKEIAISKSSSRSCT* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1250 1137 ProSiteProfiles Leucine-rich repeat profile. 583 606 IPR001611 GO:0005515
Mtr1g1250 1137 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515
Mtr1g1250 1137 Pfam Leucine Rich Repeat 583 605 IPR001611 GO:0005515
Mtr1g1250 1137 Pfam Protein kinase domain 855 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1250 1137 ProSiteProfiles Protein kinase domain profile. 854 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1250 1137 Gene3D Transferase(Phosphotransferase) domain 1 933 1135 - -
Mtr1g1250 1137 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 210 353 - -
Mtr1g1250 1137 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 126 218 - -
Mtr1g1250 1137 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 325 1132 - -
Mtr1g1250 1137 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 157 - -
Mtr1g1250 1137 ProSitePatterns Protein kinases ATP-binding region signature. 860 883 IPR017441 GO:0005524
Mtr1g1250 1137 SMART LRR_typ_2 629 653 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 677 700 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 413 437 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 461 485 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 341 365 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 269 293 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 582 605 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 245 268 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 149 172 IPR003591 -
Mtr1g1250 1137 SMART LRR_typ_2 173 196 IPR003591 -
Mtr1g1250 1137 Pfam Leucine rich repeat 343 402 IPR001611 GO:0005515
Mtr1g1250 1137 Pfam Leucine rich repeat 151 209 IPR001611 GO:0005515
Mtr1g1250 1137 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515
Mtr1g1250 1137 Gene3D Phosphorylase Kinase; domain 1 814 932 - -
Mtr1g1250 1137 Gene3D Ribonuclease Inhibitor 459 776 IPR032675 -
Mtr1g1250 1137 SUPERFAMILY Protein kinase-like (PK-like) 834 1125 IPR011009 -
Mtr1g1250 1137 Gene3D Ribonuclease Inhibitor 266 359 IPR032675 -
Mtr1g1250 1137 Gene3D Ribonuclease Inhibitor 34 197 IPR032675 -
Mtr1g1250 1137 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Mtr1g1250 1137 PRINTS Leucine-rich repeat signature 176 189 - -
Mtr1g1250 1137 PRINTS Leucine-rich repeat signature 701 714 - -
Mtr1g1250 1137 ProSiteProfiles Leucine-rich repeat profile. 175 196 IPR001611 GO:0005515
Mtr1g1250 1137 SUPERFAMILY RNI-like 83 426 - -
Mtr1g1250 1137 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Mtr1g1250 1137 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 210 353 - -
Mtr1g1250 1137 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 325 1132 - -
Mtr1g1250 1137 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 126 218 - -
Mtr1g1250 1137 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 157 - -
Mtr1g1250 1137 SUPERFAMILY RNI-like 421 740 - -
Mtr1g1250 1137 ProSitePatterns Tyrosine protein kinases specific active-site signature. 978 990 IPR008266 GO:0004672|GO:0006468
Mtr1g1250 1137 Gene3D Ribonuclease Inhibitor 360 458 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1250 Mtr-Chr1 14825069 14828707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1250 9 627 Receptor kinase-like Gene Family AT4G08850 33.025 1.94e-95 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g1250 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1250 - - mtr:MTR_1g040615 1369.76