Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1247 ATGGATTCTCATGAACCACAACAACCACACCCTCACCCTCACCCAGACCACCTTCAATTGGAAAATGTTGTACTAGTGGATCCTAATCCATTCACAAACACTGTTTTGACCACCATGATGGAACCGATCACTGCTCGATTCCCTCAACTCCACATGAACACTAACCAACCCCCTCATTCCGAGCCTCTCAACAACAACATTCCTTCTACCTTGAAACCATGTGTGACTGCTTCCTCTGGATCTGGTTCAATCCATAAAAAAAAGGGTCGACCGAGGAAGTATTTTCCTGATGGAAACATTGCTTTGGTCTCAAGCCCAGCCCTGGATGCTACCATTACTTCTCATTCTTCTTCCATTGCCAATAAGAGTACTAGGGGAAGAGGAAGGCCCCGTGGATCATTGAACAAGAAGAAGAAAGTTGAAGTGTCTGGAGTTAGTGGAACTGGTTTCTCTCAACATGTGATCACTGTGAACCCTGGAGAGGACATTGTTATGAAACTTAAGACTTTTTGTCAAGGAGGACCTAATACAGATATGTGCATTCTTTCTGCTCATGGTTTAGTTGGTACTGTAGCTCTTCATCAGTCAGGAACCATTGTTCTTCGTGAGGGTCGATTTGAGATTTTATCTCTATCAGGAATGTTAGAAGAATTTGACAACAAAAATGGCTTTAAGACAATGGGTTACTTTAAGGTGTCTTTAGTGGATCCTAATTTAAACGTTTTGGGAGGTGTAGTTGCTGATAAGCTTATTGCGGCATCCTTCGTAAAGGTTATAGTGGGTAGTTTTACTTTGGATGGCAAAAATTGTAGCTCAAGTAACCTGAAATTGGGGTCTTCTTCAATGACGATATCTCAATTTGCTGCTCCTAGGACTCCAACTAGTGCTGCTGCCTCTCAAGGGCCTTCATCTATGTCCTATGGCAACAATGAGAATATTCCCTTCGATCAAGTGCTTGGAATCTACAATAATGATAGTGAACCCATTCCTACATTATCGATGTACCAACAAATTGACTCACCAAACTCGAAGTGA 1035 0.4222 MDSHEPQQPHPHPHPDHLQLENVVLVDPNPFTNTVLTTMMEPITARFPQLHMNTNQPPHSEPLNNNIPSTLKPCVTASSGSGSIHKKKGRPRKYFPDGNIALVSSPALDATITSHSSSIANKSTRGRGRPRGSLNKKKKVEVSGVSGTGFSQHVITVNPGEDIVMKLKTFCQGGPNTDMCILSAHGLVGTVALHQSGTIVLREGRFEILSLSGMLEEFDNKNGFKTMGYFKVSLVDPNLNVLGGVVADKLIAASFVKVIVGSFTLDGKNCSSSNLKLGSSSMTISQFAAPRTPTSAAASQGPSSMSYGNNENIPFDQVLGIYNNDSEPIPTLSMYQQIDSPNSK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1247 344 ProSiteProfiles PPC domain profile profile. 147 285 IPR005175 -
Mtr1g1247 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 264 - -
Mtr1g1247 344 CDD DUF296 153 263 IPR005175 -
Mtr1g1247 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 264 IPR005175 -
Mtr1g1247 344 Gene3D - 152 278 - -
Mtr1g1247 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 340 IPR039605 GO:0003680
Mtr1g1247 344 MobiDBLite consensus disorder prediction 114 138 - -
Mtr1g1247 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 35 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1247 Mtr-Chr1 14785755 14788603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1247 41 324 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 37.543 2.00e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1247 - - mtr:MTR_1g038990 425.631