Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1246 ATGGATTCTCATGAACTACAACAACCACATCCTCGCCCACACCACCTTCAATTGGAAAATGTTGTATTAGATAGTCCAAATCCAGTCACAAACACTGTTCCGCTCGCCATGATGGAACCGACCATTTTCCCTCAACTCAACATGAACACTAACCAACCCCCACATTTTGAGCCTTTCAACAACAACATTGTTCCTTCTACCCTGAAACAATGTGTGGGTGCTTCCTCTGGATCTGGTTCAATTCAGAAAAAAAGGGGTCGGCCGAGGGAGTATTTTCTTGATGGATACATTGCTTCAATTGCAAAAAGGAGTACTAGGGGAAGAGGAAGACCTCATGGATCTTTGAACAAGAAGAAGAAAGTTGAAGCACCTGGAGTTACTGGAACTGATTTCTCTCAACATGTGATCACTGTGAACCCTGGTGATGACATTGTTGCGAAACTTAAGACATGTTGTCAAGGAGGACCTAATACAGAGATGTGCATTCTTTCTGCTCATGGTTTAGTTGGCACTGTCGCACTTCATCAACCTGGAAGAATTTTTATTTGTGAGGGTCAATTTGAGATTTTATCTCTCTCAGGAATGTTAGAAGTATTTGACAACAATAATGGCTTTAAGAGAATGAATTACTTTACGGTGTCTCTAGTGGAACCTAATTCAAATGTTTTTGGAGGTGTAGTTGATAAGCTTATTGCTGCATCATTGGTAAAGGTCAAAGTGGCTTGTTTTACTTTGGATGACAAAAATGGTAGCTCGAGTAACCTGAATTTGGGGCCTTCTTCAATACCAATATCCCAATTTGCTGCTTTTGGGACTCCAACTAGTGCTACCACTCAAGGTCCTTCATCTATCTCCCTTAGCAACAATGAGAACATTCCTTTGGGTTTAGGGCATGGAATCTACGGTAATGATAGTCAACCGATTCCTACTTTGTCGATGTACCAACAAACATTGGCTCGCCAAACCCAACAGTGA 975 0.4154 MDSHELQQPHPRPHHLQLENVVLDSPNPVTNTVPLAMMEPTIFPQLNMNTNQPPHFEPFNNNIVPSTLKQCVGASSGSGSIQKKRGRPREYFLDGYIASIAKRSTRGRGRPHGSLNKKKKVEAPGVTGTDFSQHVITVNPGDDIVAKLKTCCQGGPNTEMCILSAHGLVGTVALHQPGRIFICEGQFEILSLSGMLEVFDNNNGFKRMNYFTVSLVEPNSNVFGGVVDKLIAASLVKVKVACFTLDDKNGSSSNLNLGPSSIPISQFAAFGTPTSATTQGPSSISLSNNENIPLGLGHGIYGNDSQPIPTLSMYQQTLARQTQQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1246 324 Gene3D - 133 256 - -
Mtr1g1246 324 ProSiteProfiles PPC domain profile profile. 128 265 IPR005175 -
Mtr1g1246 324 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 244 - -
Mtr1g1246 324 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 243 IPR005175 -
Mtr1g1246 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 324 IPR039605 GO:0003680
Mtr1g1246 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 34 324 - -
Mtr1g1246 324 CDD DUF296 134 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1246 Mtr-Chr1 14775957 14778646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1246 73 248 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 38.693 1.88e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1246 - - mtr:MTR_1g038990 652.129