Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1243 ATGGCTGGAATAAGGGAACAAGACCAGTACATGCCAATAGCAAACGTGATTCGTATAATGCGACGAATTCTTCCGTCGCATGCAAAAATCTCCGACGACGCAAAAGAAACCATTCAAGAATGTGTATCCGAATACATAAGCTTCATAACATCCGAAGCAAACGATCGATGCCAAAGAGAACAAAGAAAAACAGTTACAGCAGAAGATATACTATGGGCAATGGGGAAACTTGGTTTTGATGATTATGTTCATCCTTTAACATTTTACCTTCAACGTTACCGTGAAAGTGAAGGTGAACCTGCTTCTGTTCGACGCACTTCTTCTCTTGCTTTGCCTCCTTCTTTTCCATTAATGCAGCAGCATTCTTCATCGTTTTCATCAATGCCACTTCCTCTAATTAATAATAATAATCATAATAGCAATGGTTATGGTCATGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGGTGATGATGCTGCTCCTTCTTCTGCTAGTTTTGTACCAAACTTTGATTGTAATTTTCTTCATCTTAAACGTGATAATCATAATAATAATATGTGA 573 0.3735 MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTVTAEDILWAMGKLGFDDYVHPLTFYLQRYRESEGEPASVRRTSSLALPPSFPLMQQHSSSFSSMPLPLINNNNHNSNGYGHGYGFDFDQGFYRDGGDDAAPSSASFVPNFDCNFLHLKRDNHNNNM* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1243 190 SUPERFAMILY Histone-fold 7 106 IPR009072 GO:0046982
Mtr1g1243 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Mtr1g1243 190 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 125 - -
Mtr1g1243 190 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Mtr1g1243 190 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Mtr1g1243 190 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Mtr1g1243 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr1g1243 190 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr1g1243 190 Gene3D Histone, subunit A 2 121 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1243 Mtr-Chr1 14753186 14753783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1243 4 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.039 5.83e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr1g1243 CBFD_NFYB_HMF 1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1243 K08065 - gmx:100811633 223.402