Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1236 ATGGGATCCAAGGTTCTTCCTTCTCTCCAGCCTATCAAATCATTGCCTCCTGATTTCAAGGTTAACGGTAATCTGATCCATGATGTAATGGAAAGCCGTGGAGACGCTAAACTGAGAAGCGGTGGTTTGGCTGGATCAAGTAGTCCTGAAAATTATTATCTTTCTGAAGAAGCTCAAGATCGTGCCGGTGGTGTGGGTCTTTTCAATGAGGACATAGCGTATAGTGGAAAATCTGTATTATTAGAAGACAGGGAATCTATTGTTGATGAAGGCTTGGAATCTGTTCCTCTCCCCTTCCAATCAGTTTCAGTGTCTTCTAGGGAATCTAGGTGGAGTGATACGACACCTTATGTTTCAAAGAAGAAACTTCAATCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAATATAATAAAAACTTCTGGAACAGAATCTGTTATTTCATTGCCAGATGGGAAGGTTTTGAAAGTGAAACAAGACAGTTTGGTATCGGCCAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAACGAACCGTCAGTTTTATACGATCTGCAGTATAGATACAATCAAAATATGATATATACAAAAGCGGGACCTGTTTTGGTTGCTGTAAATCCTTTCAAGAAAGTTCCTCTGTATGGTAACAATTATATTGAAGCCTACAAGCGTAAAGCAACTGAAAGCCCTCATGTATATGCGATTACAGACACAGCCATCCGAGAAATGATACGAGATGAAGTTAATCAGTCAATAATTATAAGTGGTGAGAGTGGAGCTGGGAAGACAGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCTCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTCGAAGCCTTTGGGAATGCAAAAACTTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGCGAAACTGGAAAAATTTCTGGTGCTAATATTCAAACATTTTTGCTTGAAAAGTCTAGAGTAGTTCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCATCTATGTGCCGGTGCACCACCATCTCTTCGAGAGAAGCTCAACCTACAAAATGCAGAAGATTATAAATATTTGAAGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGCATAGTCATGGAAGCTCTTGATATTGTCCACATCAGTAAAGAGGATCAAGAGACTGTGTTTGCTATGTTAGCTGCAGTATTATGGTTAGGGAACATATCATTTACTGTCATTGATAATGAAAACCATGTTCAAGCTGTTGAAAATGAGGGTTTGTTACACGTCGCCGAATTGATTGGCTGTGAAGTTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGGAATGATAATATTGTCCAAAAGTTGACACAATCACAGGCAATTGATGCAAGAGATGCTTTGGCGAAGTCTATATATTCATGCCTGTTTGATTGGTTGGTTGAACAAATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGAAGATCAATCAGTATTCTAGATATATATGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTTTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCACTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTGGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTTGAGAAGAGACCACTGGGGTTATTATCCCTGCTAGATGAAGAATCCACTTTCCCAAATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTAAATTCCAAATCATGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTGTGTCATTATGCTGGAGAGGTCACTTACGATACAACTGGGTTTCTGGAGAAGAATAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATGTACATGTCATCTTCCTCAAATATTTGCATCCCATATGCTTACACAGTCTGAAAAGCCAGTAGTTGGTCCTTCACACAAGTCAGGTGGGCCAGATTCCCAAAAGCTAAGTGTGGCAACAAAATTCAAGGGTCAGTTGTTCCAATTGATGCAACGCTTAGAGAGCACAACTCCACATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCACCTGAAACATATGAACAAGGGCTTGTACTGCAACAGCTGAGATGCTGTGGGGTGCTGGAAGTGGTTCGAATATCAAGATCCGGCTTTCCAACCAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGCTTTCTCCTTGATAATGCGGCATCACAGGATCCACTTAGTGTTTCAGTTTCAATTCTTCATCAATTTAATATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAGTTATTTTTCCGAACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTTCATGGCATCTTACGTGTCCAAAGTTGCTTTAGGGGTTACCAAGCTCGTCGTTCCCTCAAGAAGCTTCGAGGAGGAATCTCTACTTTGCAGTCATTTATTCGGGGACAGAAAACGAGAAAGGCATATGCTGCTTTACTTCAGAGACATAGAGCTGCTATTATTATACAGAAGCGGATAAAAGCATTGCTCATAAGAAACAGAACAGGGACTATTAGAGATGCTACAATTGTCATACAATCAGTCATTCGGGGATGGTTGGTCAGAAGATGCTCAGGAGATATTGGATTTTTGAAACACGGGGACACAAAGACAACAGGGTCGGATGAGATTCTGGTGAAGTCATCTTTCCTGGCTGAATTGCAGCGCCGGGTACTTAAGGCTGAAGCTGCTCTGAGAGAGAAAGATGAGGAAAATGACATCCTTAACCAACGTATCCAACAGTACGAGAACAGATGGTCTGAATATGAGTTGAAGATGAAATCCATGGAAGACGTGTGGCAGAAACAAATGAGATCACTTCAATCTAGCCTCTCCATTGCTAAGAAGAGCCTTGCTATTGATGACTCTGACAGAAATTCAGATGCATCTGTTAATAATGCAAGTGATGAGCGTGATTACAGCTGGGATGCGGGAAGTAATCACAGGCGCCAAGAAAGCAACGGAACAAGATCAACGAGTGCTAGTTTGAGTGTTATAAGTCGGCTTGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTAGTTGAGGTAAAATCTGGTCAAGCAGAAGCAAGTTTGAATCCAGATCAAGAACTTAGAAGGCTAAAACAGATGTTTGAAGCTTGGAAAAGGGATTACGGGGCAAGATTGCGTGAAACAAAGTTAATTATAAATAAACTTGGAACTGAAGATAGTGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGA 3513 0.4002 MGSKVLPSLQPIKSLPPDFKVNGNLIHDVMESRGDAKLRSGGLAGSSSPENYYLSEEAQDRAGGVGLFNEDIAYSGKSVLLEDRESIVDEGLESVPLPFQSVSVSSRESRWSDTTPYVSKKKLQSWFQLPNGNWELANIIKTSGTESVISLPDGKVLKVKQDSLVSANPDILDGVDDLMQLSYLNEPSVLYDLQYRYNQNMIYTKAGPVLVAVNPFKKVPLYGNNYIEAYKRKATESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYHLCAGAPPSLREKLNLQNAEDYKYLKQSNCYSITGVNDAEEFRIVMEALDIVHISKEDQETVFAMLAAVLWLGNISFTVIDNENHVQAVENEGLLHVAELIGCEVEDLKLTLSTRKMKVGNDNIVQKLTQSQAIDARDALAKSIYSCLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASHMLTQSEKPVVGPSHKSGGPDSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPETYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLDNAASQDPLSVSVSILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARRSLKKLRGGISTLQSFIRGQKTRKAYAALLQRHRAAIIIQKRIKALLIRNRTGTIRDATIVIQSVIRGWLVRRCSGDIGFLKHGDTKTTGSDEILVKSSFLAELQRRVLKAEAALREKDEENDILNQRIQQYENRWSEYELKMKSMEDVWQKQMRSLQSSLSIAKKSLAIDDSDRNSDASVNNASDERDYSWDAGSNHRRQESNGTRSTSASLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQAEASLNPDQELRRLKQMFEAWKRDYGARLRETKLIINKLGTEDSALEKMKKKWWGRRNSTRIN* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1236 1170 PRINTS Myosin heavy chain signature 203 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 PRINTS Myosin heavy chain signature 257 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 PRINTS Myosin heavy chain signature 531 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 PRINTS Myosin heavy chain signature 584 612 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 ProSiteProfiles Myosin motor domain profile. 173 844 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 ProSiteProfiles IQ motif profile. 848 875 IPR000048 GO:0005515
Mtr1g1236 1170 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 8 1170 - -
Mtr1g1236 1170 MobiDBLite consensus disorder prediction 1037 1053 - -
Mtr1g1236 1170 SMART MYSc_2a 167 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 Pfam IQ calmodulin-binding motif 919 936 IPR000048 GO:0005515
Mtr1g1236 1170 Pfam IQ calmodulin-binding motif 850 867 IPR000048 GO:0005515
Mtr1g1236 1170 Pfam IQ calmodulin-binding motif 873 889 IPR000048 GO:0005515
Mtr1g1236 1170 SMART iq_5 894 916 IPR000048 GO:0005515
Mtr1g1236 1170 SMART iq_5 868 890 IPR000048 GO:0005515
Mtr1g1236 1170 SMART iq_5 845 867 IPR000048 GO:0005515
Mtr1g1236 1170 SMART iq_5 917 939 IPR000048 GO:0005515
Mtr1g1236 1170 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 120 169 IPR004009 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 PANTHER MYOSIN 8 1170 - -
Mtr1g1236 1170 MobiDBLite consensus disorder prediction 1035 1074 - -
Mtr1g1236 1170 Gene3D Myosin VI head, motor domain, U50 subdomain 412 520 - -
Mtr1g1236 1170 Gene3D Kinesin motor domain 172 778 IPR036961 -
Mtr1g1236 1170 Coils Coil 964 1012 - -
Mtr1g1236 1170 Gene3D - 897 938 - -
Mtr1g1236 1170 Gene3D - 848 896 - -
Mtr1g1236 1170 Pfam Myosin head (motor domain) 175 832 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g1236 1170 Gene3D - 779 845 - -
Mtr1g1236 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 892 IPR027417 -
Mtr1g1236 1170 MobiDBLite consensus disorder prediction 1060 1074 - -
Mtr1g1236 1170 CDD MYSc_Myo8 187 832 IPR036022 -
Mtr1g1236 1170 Gene3D - 355 411 - -
Mtr1g1236 1170 Gene3D - 543 735 - -
Mtr1g1236 1170 ProSiteProfiles IQ motif profile. 918 947 IPR000048 GO:0005515
Mtr1g1236 1170 ProSiteProfiles IQ motif profile. 869 898 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1236 Mtr-Chr1 14658496 14671622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1236 1 1168 Myosins gene family AT1G50360 74.106 0.0 1771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1236 - K10357 gmx:100781736 2051.17